Non-Coding RNA Search

Ss1.1-Pig3-SRG8008O07.3

Sequence:


               
               TTAGAGGACGGCTTAGCTAGTGAGATCTATATTGTGGTTATACAAGGTCTCATGGTTTGT
TTATTTCTTTTAAATTATTTTAGCTTTAAAAATATGGAAATGGAATCTGTCAAGAGCAGG
TATTTCATGCAGTAAAAAAAAATGAGCGTGCAGACTCCTTTTCAATATGGGTTTATATAT
ATAAATATTTTGTGTATTATGACTAAGTTAGGCATTTAATAGTGCCAAGGACAGTTCAAC
TGTAAAGGGATGCTTGATAGCAGGGCATCAGAAGTCTGAAGGAGTTGACACATTTTCTCA
GAGCTCAAGGTCTTAAAGAGCTTGAGTTAAATCTAGGTACAGTCGCAGGCGTGTATAGAC
TTAAATGGATGCAATGGAAGCTAACTAAAACAAGGCTTAGTTGTCCTTTATATTTAAATA
TCCTGAATTGTCTTCTTCCTTCCTTCCTCCCCTCCCCCATTTTGCACTGTGTGTCGATGC
AATCTTCGCTAGCACAAAATATTGTCGCTAATAGTCATTTCTGTTTTCCCACTGTAAATG
CTGTTGAGCTTTATTCTATTTTATGTTATCTTGTTAATGAAATTTAGGAAAGCAGTTGTT
TTCTTTAAATTTATTGTGATATTCTATATCTAGCGGCCTTTATATGCAAATAAAATTGCA
AGATTTTTAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAGAGGACGGCTTAGCTAGTGAGATCTATATTGTGGTTATACAAGGTCTCATGGTTTGT
TTATTTCTTTTAAATTATTTTAGCTTTAAAAATATGGAAATGGAATCTGTCAAGAGCAGG
TATTTCATGCAGTAAAAAAAAATGAGCGTGCAGACTCCTTTTCAATATGGGTTTATATAT
ATAAATATTTTGTGTATTATGACTAAGTTAGGCATTTAATAGTGCCAAGGACAGTTCAAC
TGTAAAGGGATGCTTGATAGCAGGGCATCAGAAGTCTGAAGGAGTTGACACATTTTCTCA
GAGCTCAAGGTCTTAAAGAGCTTGAGTTAAATCTAGGTACAGTCGCAGGCGTGTATAGAC
TTAAATGGATGCAATGGAAGCTAACTAAAACAAGGCTTAGTTGTCCTTTATATTTAAATA
TCCTGAATTGTCTTCTTCCTTCCTTCCTCCCCTCCCCCATTTTGCACTGTGTGTCGATGC
AATCTTCGCTAGCACAAAATATTGTCGCTAATAGTCATTTCTGTTTTCCCACTGTAAATG
CTGTTGAGCTTTATTCTATTTTATGTTATCTTGTTAATGAAATTTAGGAAAGCAGTTGTT
TTCTTTAAATTTATTGTGATATTCTATATCTAGCGGCCTTTATATGCAAATAAAATTGCA
AGATTTTTAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               224-421, + strand, RNAz p=0.88309

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               224-421, + strand, RNAz p=0.88309

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_001584, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_001584, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-671, gnl|bosTau2|chr15 (37977570-37978252)
               

               
               1-671, gnl|Hg17|chr11 (30389015-30388347)
               

               
               1-671, gnl|Mm7|chr2 (106718488-106719143)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-671, gnl|bosTau2|chr15 (37977570-37978252)
               

               
               1-671, gnl|Hg17|chr11 (30389015-30388347)
               

               
               1-671, gnl|Mm7|chr2 (106718488-106719143)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               kid (0.259471)
               

               
               fcc (0.197785)
               

               
               gul (0.177588)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.259471)
               

               
               fcc (0.197785)
               

               
               gul (0.177588)

	1-671, gnl\|bosTau2\|chr15 (37977570-37978252)
	1-671, gnl\|Hg17\|chr11 (30389015-30388347)
	1-671, gnl\|Mm7\|chr2 (106718488-106719143)