Non-Coding RNA Search

Ss1.1-Pig3-SRG8008P07.3

Sequence:


               
               GGCAAGGGTTTCAAAGTGAGGGCAGCGTCCAGATCTCCAGAGCCACACATACATACACGT
ACCCACCCTAACCCCCCGCCCACTCTGTCTCTGTGACCAGCGGACTGAGTCCGTGCTGGC
TTTATCACATGGGTTGGTAAAACTTAACCATTCCTGTTGGATGTGCCCAGAAGAAGATCA
TAAGCAAGGTAGACGGAAGGGGGCATTCCACCAAACCCAGTGTTACTGCTACTGTGGTTT
CTTTATTTTGTTAAGGGGTTTCTTTGGCAGTTTTGGAACGGCAACTGCAGTCCTCCAGGG
TCAAGGAAAGCATAGAAAAACAATACATGTTGTATCCAGGGACCAGAGGGAAGTTTTCTT
TGCATCCTATAAATGGTGGCCATCCATTATGCGATGACTGCAGAGCTTCTGTGCTTCCTT
GTCCCCATACCCACATGCTGAGCATGCTCACAAAGAGGCCTGTCCATTCCTCCTCCTGTG
TTTTCGAATTGGGCCCAGAGGTTTCCTAAATGGTTGCACCGAAATCGCTGTGGTCCAGAT
GTGATTACGTATTCACTCAAGTTGTCGCTCTCTGTAGCACACTGTGTACCTCCCTGTCTC
ATCCTCCGTCGCTCCCTCCTGCACTCTTGCTTAGTCTGTCATCTGTTCATGGTCGGCTTA
CTCACACTCAATTGTTACTCCTTTGCTGTTGTTGTGTTTACAGTTTGCCTTTTGGATGAT
TAGTTGGGGTTACCAAACATTTTTAAAAGAGACATTATCAATAAATATTTTTTTAATTCT
AAATTTTATCATTAGGGGACCCTGCCTGAATCTTTGCCAGTCTGAAGGGAAACTATAACA
AAAGCAAGAAAAGTTATGAGGAGAAACTAAGCTAAAGCTATTATGATGAAAACAAACTTT
CCCTTTTGGTTTCTGTTATATCTTGTGATAAAATGATAATACGCATGATACGCTCAGTAT
TCCCCCTGCCCGTTTTTCCTCCTATCTGACTTAATAAGGAGAGAGAAATGCTTTATTAGT
AAAGCGTGGCATGGCAGATGCCAAAACTGAACTTGAAAGCCACCGCCACCCAAGCACAGA
CATGGTGTGTGTTCACTGAAATCTAGGTGTCATCAGTGGCCTCTCAGATACTGTGTCTGT
GAGGTTCGTTCTGCTTTAGCAGGAATGCTGCTGGAGGAGTTGTGCTGTCGAGCCAGGCAG
TTTCTCTTCTTTCCCCCCATTTGAACCCTTCAGGGATACAAGAATGACCTCATCACAGCT
GGTCAGCTGTATGTCAGTGTTGATGGTATCATATCTAACGTTGGCGCCTCAAAGGACCAG
AACCTTTTCAGAACCCGTCAGCCATGTCTCTCTCATGCTCCAGACTTTCTGTGCATGAAA
CTCTGGAGTGGCCAGATGAGGGCATTGGGGCAGCAGAAAGAGAACGTTGAGAGGAAGTAG
GGGGTTCAGTGTCTTTGCCTAGCCTGGTCCCCAGAGCCAAGGGCAGGGTGTTCAGTATCC
ATGACTCAGAGTCAAAGAAGAAGCTCCCCCTCCCACCCCCCACCCCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCAAGGGTTTCAAAGTGAGGGCAGCGTCCAGATCTCCAGAGCCACACATACATACACGT
ACCCACCCTAACCCCCCGCCCACTCTGTCTCTGTGACCAGCGGACTGAGTCCGTGCTGGC
TTTATCACATGGGTTGGTAAAACTTAACCATTCCTGTTGGATGTGCCCAGAAGAAGATCA
TAAGCAAGGTAGACGGAAGGGGGCATTCCACCAAACCCAGTGTTACTGCTACTGTGGTTT
CTTTATTTTGTTAAGGGGTTTCTTTGGCAGTTTTGGAACGGCAACTGCAGTCCTCCAGGG
TCAAGGAAAGCATAGAAAAACAATACATGTTGTATCCAGGGACCAGAGGGAAGTTTTCTT
TGCATCCTATAAATGGTGGCCATCCATTATGCGATGACTGCAGAGCTTCTGTGCTTCCTT
GTCCCCATACCCACATGCTGAGCATGCTCACAAAGAGGCCTGTCCATTCCTCCTCCTGTG
TTTTCGAATTGGGCCCAGAGGTTTCCTAAATGGTTGCACCGAAATCGCTGTGGTCCAGAT
GTGATTACGTATTCACTCAAGTTGTCGCTCTCTGTAGCACACTGTGTACCTCCCTGTCTC
ATCCTCCGTCGCTCCCTCCTGCACTCTTGCTTAGTCTGTCATCTGTTCATGGTCGGCTTA
CTCACACTCAATTGTTACTCCTTTGCTGTTGTTGTGTTTACAGTTTGCCTTTTGGATGAT
TAGTTGGGGTTACCAAACATTTTTAAAAGAGACATTATCAATAAATATTTTTTTAATTCT
AAATTTTATCATTAGGGGACCCTGCCTGAATCTTTGCCAGTCTGAAGGGAAACTATAACA
AAAGCAAGAAAAGTTATGAGGAGAAACTAAGCTAAAGCTATTATGATGAAAACAAACTTT
CCCTTTTGGTTTCTGTTATATCTTGTGATAAAATGATAATACGCATGATACGCTCAGTAT
TCCCCCTGCCCGTTTTTCCTCCTATCTGACTTAATAAGGAGAGAGAAATGCTTTATTAGT
AAAGCGTGGCATGGCAGATGCCAAAACTGAACTTGAAAGCCACCGCCACCCAAGCACAGA
CATGGTGTGTGTTCACTGAAATCTAGGTGTCATCAGTGGCCTCTCAGATACTGTGTCTGT
GAGGTTCGTTCTGCTTTAGCAGGAATGCTGCTGGAGGAGTTGTGCTGTCGAGCCAGGCAG
TTTCTCTTCTTTCCCCCCATTTGAACCCTTCAGGGATACAAGAATGACCTCATCACAGCT
GGTCAGCTGTATGTCAGTGTTGATGGTATCATATCTAACGTTGGCGCCTCAAAGGACCAG
AACCTTTTCAGAACCCGTCAGCCATGTCTCTCTCATGCTCCAGACTTTCTGTGCATGAAA
CTCTGGAGTGGCCAGATGAGGGCATTGGGGCAGCAGAAAGAGAACGTTGAGAGGAAGTAG
GGGGTTCAGTGTCTTTGCCTAGCCTGGTCCCCAGAGCCAAGGGCAGGGTGTTCAGTATCC
ATGACTCAGAGTCAAAGAAGAAGCTCCCCCTCCCACCCCCCACCCCCC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-1530, gnl|bosTau2|chr19 (34721407-34722904)
               

               
               1-1530, gnl|Hg17|chr17 (34671144-34669311)
               

               
               1-1530, gnl|Mm7|chr11 (98198536-98196824)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1530, gnl|bosTau2|chr19 (34721407-34722904)
               

               
               1-1530, gnl|Hg17|chr17 (34671144-34669311)
               

               
               1-1530, gnl|Mm7|chr11 (98198536-98196824)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               ecc (0.115035)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               ecc (0.115035)

	1-1530, gnl\|bosTau2\|chr19 (34721407-34722904)
	1-1530, gnl\|Hg17\|chr17 (34671144-34669311)
	1-1530, gnl\|Mm7\|chr11 (98198536-98196824)