Non-Coding RNA Search

Ss1.1-Pig3-SRG8009A04.3

Sequence:


               
               GTCCATCCTGTGATGAGCTTGATCAAATCATGGAAAACTGTCTTCTTCCTGAGCTGAATG
TGGGAGATTGGCTTATCTTTGATAACATGGGAGCAGATTCTTTGCATGAACCATCTGCTT
TTAATGATTTTCAGAGGCCAGCTATATATTATATGATGTCATACAGTGATTGGTATGAGA
TGCAGGATGCTGGAATTACTTCAGACATGATGATGAAGAACTTCTTTGTGCCTTCTTGCA
TTCAGCTGAGCCAAGAAGACAGCTTTTCCACTGAAGCTTAAACAGGCATTAATACTTCTT
TAGATCTGAAGTTGCAGGTTAAGCTTGTCTGGTCTACATTCCAGTCTGGAAAAAAATGAA
CCATCTTATTCTGTTAATTCTCTTGGAAACAAAAATATTAGTAAATAGCTATTTGGGACC
AGACAGAATCAGCTCTCATCTATAATTCACAGGGGCTAATTGGGAGATTAAGATAATGTA
TCCAGATTTAAACTTAACCAGTTTGCCCTACCCCTCAAGCATTTAAAATAAAATATGCAA
CAAAATGGATGACTTAGTGGAGATGGAAGCCCATTAATTGGGTTCCCCATTAAACCGTTT
ACATACAAGTACACAGTTTTTATACTAAGGATTCGTGTTAAAAAGTCTTGTAAAGTTAAT
GTCTTTCACCCAGAGATATCAGCTGTCAGTGGAAGACCAGTGTGACTTCATTAGATACGT
TTAGTGTATTTAGAATGTGTAAATTTGTGCTTTGAACTGTAGTTTATTAAATGTAAAATT
GCATCATAGTATTTGTTGTATTTGACCTAATGTAACCCTTGTATGATTGCAATAAAATTT
TGTGTAGATTTTACTGTTTTTTCAGGCTAAAACTGGGAAAGGGGCTAGCTAGTGTAGGTA
GTTTTGAAATAGATGTGTATATGGACTGTTTTGAAGGTTATTTTCCTTTATAGCCCATTT
TGAGTTTAGTTTGGCTCAGTACACTTTTCAGTTATTTAATTAGTAATTTAAGCAAAATGT
TTGGTAAATCATTGTGAAGTTCAGATTCATTTTGGAGAGTTGATGTGCAGTAAGCATGAT
AACAATTTTAACACCAAAAATGTTACTTCTGCATAAACCAATTGTAATTAATAGGTGTTT
CTGTATAGATAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCCATCCTGTGATGAGCTTGATCAAATCATGGAAAACTGTCTTCTTCCTGAGCTGAATG
TGGGAGATTGGCTTATCTTTGATAACATGGGAGCAGATTCTTTGCATGAACCATCTGCTT
TTAATGATTTTCAGAGGCCAGCTATATATTATATGATGTCATACAGTGATTGGTATGAGA
TGCAGGATGCTGGAATTACTTCAGACATGATGATGAAGAACTTCTTTGTGCCTTCTTGCA
TTCAGCTGAGCCAAGAAGACAGCTTTTCCACTGAAGCTTAAACAGGCATTAATACTTCTT
TAGATCTGAAGTTGCAGGTTAAGCTTGTCTGGTCTACATTCCAGTCTGGAAAAAAATGAA
CCATCTTATTCTGTTAATTCTCTTGGAAACAAAAATATTAGTAAATAGCTATTTGGGACC
AGACAGAATCAGCTCTCATCTATAATTCACAGGGGCTAATTGGGAGATTAAGATAATGTA
TCCAGATTTAAACTTAACCAGTTTGCCCTACCCCTCAAGCATTTAAAATAAAATATGCAA
CAAAATGGATGACTTAGTGGAGATGGAAGCCCATTAATTGGGTTCCCCATTAAACCGTTT
ACATACAAGTACACAGTTTTTATACTAAGGATTCGTGTTAAAAAGTCTTGTAAAGTTAAT
GTCTTTCACCCAGAGATATCAGCTGTCAGTGGAAGACCAGTGTGACTTCATTAGATACGT
TTAGTGTATTTAGAATGTGTAAATTTGTGCTTTGAACTGTAGTTTATTAAATGTAAAATT
GCATCATAGTATTTGTTGTATTTGACCTAATGTAACCCTTGTATGATTGCAATAAAATTT
TGTGTAGATTTTACTGTTTTTTCAGGCTAAAACTGGGAAAGGGGCTAGCTAGTGTAGGTA
GTTTTGAAATAGATGTGTATATGGACTGTTTTGAAGGTTATTTTCCTTTATAGCCCATTT
TGAGTTTAGTTTGGCTCAGTACACTTTTCAGTTATTTAATTAGTAATTTAAGCAAAATGT
TTGGTAAATCATTGTGAAGTTCAGATTCATTTTGGAGAGTTGATGTGCAGTAAGCATGAT
AACAATTTTAACACCAAAAATGTTACTTCTGCATAAACCAATTGTAATTAATAGGTGTTT
CTGTATAGATAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|3283904|gb|AAC25391.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|3283904|gb|AAC25391.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               326-440, - strand, RNAz p=0.990762
               

               
               521-680, + strand, RNAz p=0.892596

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               326-440, - strand, RNAz p=0.990762
               

               
               521-680, + strand, RNAz p=0.892596

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_015878, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_015878, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               172-1152, gnl|bosTau2|chr14 (37001766-37000777)
               

               
               172-1152, gnl|Hg17|chr8 (103910083-103909100)
               

               
               172-1152, gnl|Mm7|chr15 (38601237-38600253)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               172-1152, gnl|bosTau2|chr14 (37001766-37000777)
               

               
               172-1152, gnl|Hg17|chr8 (103910083-103909100)
               

               
               172-1152, gnl|Mm7|chr15 (38601237-38600253)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               ebs (0.354904)
               

               
               liv (0.292569)
               

               
               lyg (0.266205)
               

               
               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               ldo (0.0970026)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.354904)
               

               
               liv (0.292569)
               

               
               lyg (0.266205)
               

               
               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               ldo (0.0970026)

	326-440, - strand, RNAz p=0.990762
	521-680, + strand, RNAz p=0.892596

	172-1152, gnl\|bosTau2\|chr14 (37001766-37000777)
	172-1152, gnl\|Hg17\|chr8 (103910083-103909100)
	172-1152, gnl\|Mm7\|chr15 (38601237-38600253)

	ebs (0.354904)
	liv (0.292569)
	lyg (0.266205)
	tes (0.207814)
	fcc (0.197785)
	fty (0.17584)
	ton (0.1755)
	fbs (0.175346)
	rec (0.17307)
	fco (0.157208)
	isp (0.150376)
	thg (0.126791)
	tra (0.123092)
	ldo (0.0970026)