Non-Coding RNA Search

Ss1.1-Pig3-SRG8009A04.5

Sequence:


               
               TTGCAACAGAAGATAATATTGGAGGTGAAGAGGGTAACATGAAGTTTGGCACTACCCTGA
AGAACTGTAGGCATCTTTTGGAATGTGCTAAGGAACTTGATGTCCAAATTATTGGGGTTA
AATTTCATGTTTCAAGTGCTTGCAAGGAATCTCAAGTATATGTACATGCCCTGTCTGATG
CTCGATGTGTGTTTGACATGGCTGGGGAGTTTGGCTTTACAATGAACATGTTAGACATCG
GTGGAGGCTTCACAGGAACTGAAATTCAGTTGGAAGAGGTTAATCATGTTATCAGTCCTC
TGTTGGATATTTACTTCCCTGAAGGATCTGGCATTCAGATCATTTCCGAACCTGGAAGCT
ACTATGTATCTTCTGCATTTACGCTTGCAGTCAATATTATTGCTAAGAAAGTTGTTGAAA
ATGATAAATTATCCTCTGGAGAAAAAAATGGGAGTGACGAGCCAGCCTTCGTGTACTACA
TGAATGACGGTGTTTATGGTTCTTTTGCAAGTAAACTGTCTGAGGACTTAAATACCATTC
CAGAGGTTCATAAGATATACAAGGAAGATGAGCCTCTGTTTACAAGCAGCCTTTGGGGTC
CATCCTGTGATGAGCTTGATCAAATCATGGAAAACTGTCTTCTTCCTGAGCTGAATGTGG
GAGATTGGCTTATCTTTGATAACATGGGAGCAGATTCTTTGCATGAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGCAACAGAAGATAATATTGGAGGTGAAGAGGGTAACATGAAGTTTGGCACTACCCTGA
AGAACTGTAGGCATCTTTTGGAATGTGCTAAGGAACTTGATGTCCAAATTATTGGGGTTA
AATTTCATGTTTCAAGTGCTTGCAAGGAATCTCAAGTATATGTACATGCCCTGTCTGATG
CTCGATGTGTGTTTGACATGGCTGGGGAGTTTGGCTTTACAATGAACATGTTAGACATCG
GTGGAGGCTTCACAGGAACTGAAATTCAGTTGGAAGAGGTTAATCATGTTATCAGTCCTC
TGTTGGATATTTACTTCCCTGAAGGATCTGGCATTCAGATCATTTCCGAACCTGGAAGCT
ACTATGTATCTTCTGCATTTACGCTTGCAGTCAATATTATTGCTAAGAAAGTTGTTGAAA
ATGATAAATTATCCTCTGGAGAAAAAAATGGGAGTGACGAGCCAGCCTTCGTGTACTACA
TGAATGACGGTGTTTATGGTTCTTTTGCAAGTAAACTGTCTGAGGACTTAAATACCATTC
CAGAGGTTCATAAGATATACAAGGAAGATGAGCCTCTGTTTACAAGCAGCCTTTGGGGTC
CATCCTGTGATGAGCTTGATCAAATCATGGAAAACTGTCTTCTTCCTGAGCTGAATGTGG
GAGATTGGCTTATCTTTGATAACATGGGAGCAGATTCTTTGCATGAAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|9055298|ref|NP_061215.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|9055298|ref|NP_061215.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               69-691, gnl|bosTau2|chr11 (67404606-67405224)
               

               
               69-691, gnl|Hg17|chr2 (10534478-10532311)
               

               
               69-691, gnl|Mm7|chr5 (95188109-95188753)
               


               
               75-688, gnl|bosTau2|chr11 (66707397-66706775)
               

               
               75-688, gnl|Hg17|chr7 (128263397-128264316)
               

               
               75-688, gnl|Mm7|chr5 (95188128-95188750)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               69-691, gnl|bosTau2|chr11 (67404606-67405224)
               

               
               69-691, gnl|Hg17|chr2 (10534478-10532311)
               

               
               69-691, gnl|Mm7|chr5 (95188109-95188753)
               


               
               75-688, gnl|bosTau2|chr11 (66707397-66706775)
               

               
               75-688, gnl|Hg17|chr7 (128263397-128264316)
               

               
               75-688, gnl|Mm7|chr5 (95188128-95188750)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	69-691, gnl\|bosTau2\|chr11 (67404606-67405224)
	69-691, gnl\|Hg17\|chr2 (10534478-10532311)
	69-691, gnl\|Mm7\|chr5 (95188109-95188753)

	75-688, gnl\|bosTau2\|chr11 (66707397-66706775)
	75-688, gnl\|Hg17\|chr7 (128263397-128264316)
	75-688, gnl\|Mm7\|chr5 (95188128-95188750)