Non-Coding RNA Search

Ss1.1-Pig3-SRG8009B07.3

Sequence:


               
               CAACCATAAGGTTGTTCCATTTTCATAAAATTGGAAAAAATGCAGTAATTGCTTATTGTT
GTTTTTGTTTTTTAAAGAAGATATTTTATTATCTTTTACAGAAATTTATGATTGATGTAT
TTTATCTATAGTTATTTAGACATGTTTACATGCAGCAGATAATTGTTCATAGTGGACTGA
AAACTTAATGCAAGGACTATGGTCTCAGTGATAAGTATATTTTGAAGTTCTTAATTATGG
AAATATACCAGTGTAGCTTGGTACTGTATTTTTTATATTGATCTGCTGATACCAGTTATA
GTTGTAAAGATTGTATTTTCCCAGAGTGGAAACCAGTGTTTTTGCATCATTAATAAAGGA
GGGTATGATATTACATGTTTAGGAATTCACAGCTAATTGTTAAAGGGCCTGAAATACACT
TTAAAGAAATTCTTACAAAAAAGCAAAGCTCCATTAGCAAGGAAGAATTTGAAGTATTGA
GCTTTTTCTTCCATTTTACTCTTTCCTATTCTGATGGCAGCAAGAACTGGAAAGTGGGAA
AGAACTGAGGCTTTCCTTTTTGGAGAGCTATGAATGACTAGAATTAGAATGGGACCCTTT
AGTTTATTATTCTTTTGTTCTGGTTTTACTTTTTAAAATAAATGAAAATTTGGCACACTT
AGGGTGTTAACAAATCCCAAAGAGGCTGATAAAAAACCCTGTTGAATAGTTGCAAGCTAA
ATATGATTGACTTGGTATCTGCTTGTTACTCCTCAGAAATACTACACTGCGTATATGTCC
TTATTACTGGACTTCATTTTGATACTTGTCTATCCTTCATAGTGCCCTCTACTTTTAAAG
GGTTTATATGTTGAAAAACTGCTGTGGCCTTTTATGACCTGTATATAATTGTAGAATAAA
ATAATAAAATACTTGATAGCTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAACCATAAGGTTGTTCCATTTTCATAAAATTGGAAAAAATGCAGTAATTGCTTATTGTT
GTTTTTGTTTTTTAAAGAAGATATTTTATTATCTTTTACAGAAATTTATGATTGATGTAT
TTTATCTATAGTTATTTAGACATGTTTACATGCAGCAGATAATTGTTCATAGTGGACTGA
AAACTTAATGCAAGGACTATGGTCTCAGTGATAAGTATATTTTGAAGTTCTTAATTATGG
AAATATACCAGTGTAGCTTGGTACTGTATTTTTTATATTGATCTGCTGATACCAGTTATA
GTTGTAAAGATTGTATTTTCCCAGAGTGGAAACCAGTGTTTTTGCATCATTAATAAAGGA
GGGTATGATATTACATGTTTAGGAATTCACAGCTAATTGTTAAAGGGCCTGAAATACACT
TTAAAGAAATTCTTACAAAAAAGCAAAGCTCCATTAGCAAGGAAGAATTTGAAGTATTGA
GCTTTTTCTTCCATTTTACTCTTTCCTATTCTGATGGCAGCAAGAACTGGAAAGTGGGAA
AGAACTGAGGCTTTCCTTTTTGGAGAGCTATGAATGACTAGAATTAGAATGGGACCCTTT
AGTTTATTATTCTTTTGTTCTGGTTTTACTTTTTAAAATAAATGAAAATTTGGCACACTT
AGGGTGTTAACAAATCCCAAAGAGGCTGATAAAAAACCCTGTTGAATAGTTGCAAGCTAA
ATATGATTGACTTGGTATCTGCTTGTTACTCCTCAGAAATACTACACTGCGTATATGTCC
TTATTACTGGACTTCATTTTGATACTTGTCTATCCTTCATAGTGCCCTCTACTTTTAAAG
GGTTTATATGTTGAAAAACTGCTGTGGCCTTTTATGACCTGTATATAATTGTAGAATAAA
ATAATAAAATACTTGATAGCTTTT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               475-590, - strand, RNAz p=0.857134
               

               
               763-881, - strand, RNAz p=0.976926

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               475-590, - strand, RNAz p=0.857134
               

               
               763-881, - strand, RNAz p=0.976926

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-881, gnl|bosTau2|chr24 (25010464-25011344)
               

               
               1-881, gnl|Hg17|chr18 (17364189-17363311)
               

               
               1-881, gnl|Mm7|chr18 (10773936-10773211)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-881, gnl|bosTau2|chr24 (25010464-25011344)
               

               
               1-881, gnl|Hg17|chr18 (17364189-17363311)
               

               
               1-881, gnl|Mm7|chr18 (10773936-10773211)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               ece (0.229305)
               

               
               lun (0.150489)
               

               
               pla (0.133672)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               lun (0.150489)
               

               
               pla (0.133672)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

	475-590, - strand, RNAz p=0.857134
	763-881, - strand, RNAz p=0.976926

	1-881, gnl\|bosTau2\|chr24 (25010464-25011344)
	1-881, gnl\|Hg17\|chr18 (17364189-17363311)
	1-881, gnl\|Mm7\|chr18 (10773936-10773211)

	ece (0.229305)
	lun (0.150489)
	pla (0.133672)
	sug (0.127291)
	thg (0.126791)
	jej (0.0989218)
	ldo (0.0970026)