Non-Coding RNA Search

Ss1.1-Pig3-SRG8009E11.3

Sequence:


               
               AGTCTGAAAAATCCAGAGGGTTGATGCAGATGAGTGAACCAGTCCAGTGGCAAACTAGCA
AAGAAATGCCTAACTGAAAAGGAACGTTCAATACTCAAAACTGAAGCTGAGGGATTGCTA
AGATTTCTAAATCTTATGTAATCTCTTGAGTTTTAAATGTCAGCTGATTCAGAGTCTAGT
GCAGACCAATCTCTGGGCAGAAGGTGGTCACTTGCAGTCCCTGGTTTAAAGCAGAATACA
ATCAAGGGGCCTGTTTGGCTGGAAGATGCTGGCCAGATACAACTCTGGATGGATGATATT
AGCATCGGAGGGGTTAGGGGTAGGTGATCCTGCCCTTCTGATACTCAACTTGGTTTTGAT
ATTTGAGTATCACTACTAGAGGATATGGTAAGAGGTCAGTTGAAAAAAAATGGCAGTCTA
AAAATGAAAATGATTTAATTTTATAATGAATTCTGTGACACTCCTGTTTTGACCAAACTT
CCAGCTTCATAGAGCCAGATGATTAGATTTCTTGCTGCTTTTTTCTGAAAGTCCAATGCA
CGATTTTTATGCTTTTGAGTCTCAGTGTGTTTTTTCAAATGTGTGGCTTCAATACCCCCA
AGTTTTAATTTCCCCTCAGTTTGTATCTACAGAATTTATTCGATAGTCACAATATTGTAG
TCTGAAGTGTGGGACCACGGATTCCTATGCAGCAGATGGGGGTTGGCTGTTCGTGCACTT
TTTTCCTAAGCTGCTGAAATTCCTCCGAACTGAATTGGCCATAGTAATCTTAGCCTCCTG
CATGACTGTAAGCACGACCTCCAGTGGATCAGAAAAAGCAGCTCAGTGATTGTTCTTATG
GCCAAAAATAAAGCACAAGGTTACTAGAATTGAATAAACCCCGTTGAGGAAAGCCCAGGG
AATGTGCATCCCTGCTGGGCAGCATGATCCTTATAATAAACAATACTCTCCGGATGGTGG
CTGATGAAGGGCATTCGCCTGCCTCGGTCATGGCCAGATGCAGATACACATTAGGTATGT
CTGAGACACACCAGTTCCCACTTCCAAGCACAGTACCGTCTGCTTCATCTGATTAACACA
CACACAGGAATGAAAACTCCACCTACAGAAAACTGAGTATGTATTGTAGAAATGTAGAGG
AAAAAAAAATATTTTTTCAAATGTAATTACTTTTAATATATGCTTGTGGAAGGTCTAATA
CGATGTATGCTGTCTCTGTAATTTTTGCTGTAAATAACTAGAGACAGTGAATACACTGAT
TTTTCTATGTCTCTGTTTAAGCATAAGACTTTGTAACAATTTTTTTAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTCTGAAAAATCCAGAGGGTTGATGCAGATGAGTGAACCAGTCCAGTGGCAAACTAGCA
AAGAAATGCCTAACTGAAAAGGAACGTTCAATACTCAAAACTGAAGCTGAGGGATTGCTA
AGATTTCTAAATCTTATGTAATCTCTTGAGTTTTAAATGTCAGCTGATTCAGAGTCTAGT
GCAGACCAATCTCTGGGCAGAAGGTGGTCACTTGCAGTCCCTGGTTTAAAGCAGAATACA
ATCAAGGGGCCTGTTTGGCTGGAAGATGCTGGCCAGATACAACTCTGGATGGATGATATT
AGCATCGGAGGGGTTAGGGGTAGGTGATCCTGCCCTTCTGATACTCAACTTGGTTTTGAT
ATTTGAGTATCACTACTAGAGGATATGGTAAGAGGTCAGTTGAAAAAAAATGGCAGTCTA
AAAATGAAAATGATTTAATTTTATAATGAATTCTGTGACACTCCTGTTTTGACCAAACTT
CCAGCTTCATAGAGCCAGATGATTAGATTTCTTGCTGCTTTTTTCTGAAAGTCCAATGCA
CGATTTTTATGCTTTTGAGTCTCAGTGTGTTTTTTCAAATGTGTGGCTTCAATACCCCCA
AGTTTTAATTTCCCCTCAGTTTGTATCTACAGAATTTATTCGATAGTCACAATATTGTAG
TCTGAAGTGTGGGACCACGGATTCCTATGCAGCAGATGGGGGTTGGCTGTTCGTGCACTT
TTTTCCTAAGCTGCTGAAATTCCTCCGAACTGAATTGGCCATAGTAATCTTAGCCTCCTG
CATGACTGTAAGCACGACCTCCAGTGGATCAGAAAAAGCAGCTCAGTGATTGTTCTTATG
GCCAAAAATAAAGCACAAGGTTACTAGAATTGAATAAACCCCGTTGAGGAAAGCCCAGGG
AATGTGCATCCCTGCTGGGCAGCATGATCCTTATAATAAACAATACTCTCCGGATGGTGG
CTGATGAAGGGCATTCGCCTGCCTCGGTCATGGCCAGATGCAGATACACATTAGGTATGT
CTGAGACACACCAGTTCCCACTTCCAAGCACAGTACCGTCTGCTTCATCTGATTAACACA
CACACAGGAATGAAAACTCCACCTACAGAAAACTGAGTATGTATTGTAGAAATGTAGAGG
AAAAAAAAATATTTTTTCAAATGTAATTACTTTTAATATATGCTTGTGGAAGGTCTAATA
CGATGTATGCTGTCTCTGTAATTTTTGCTGTAAATAACTAGAGACAGTGAATACACTGAT
TTTTCTATGTCTCTGTTTAAGCATAAGACTTTGTAACAATTTTTTTAG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1166-1308, + strand, RNAz p=0.880008

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1166-1308, + strand, RNAz p=0.880008

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1308, gnl|bosTau2|chr8 (23989072-23990383)
               

               
               1-1308, gnl|Hg17|chr9 (74534806-74536165)
               

               
               1-1308, gnl|Mm7|chr19 (18634407-18633047)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1308, gnl|bosTau2|chr8 (23989072-23990383)
               

               
               1-1308, gnl|Hg17|chr9 (74534806-74536165)
               

               
               1-1308, gnl|Mm7|chr19 (18634407-18633047)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               eye (0.341006)
               

               
               ebs (0.118301)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.341006)
               

               
               ebs (0.118301)

	1-1308, gnl\|bosTau2\|chr8 (23989072-23990383)
	1-1308, gnl\|Hg17\|chr9 (74534806-74536165)
	1-1308, gnl\|Mm7\|chr19 (18634407-18633047)