Ss1.1-Pig3-SRG8009E17.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGGAGGTTGAAGCCTTCCGCCGGCTGTGGCCCGTTTCGAGGTCTGCCCTTCTTCATTCA GTCCATCTACAGCTGGATCGACACCCTGAGTAAAAGGCCCAGCTACCTGTGGGTCGTTTG GATCTACCAGAACCTCATCGGAAGCGTGCACTTCTTCTTCATCCTCACCCTCATCGTGTT AATCATCACTTACCTTTACTGGCAGATCACAGAGGGAAGGAAGATTATGATCAGACTGCT CCATGAACAGATCATCAATGAGGGCAAAGACAAAATGTTCCTGATAGAAAAGTTACTCAA GCTGCAGGATACAGAGAAGAGAGCAAACTCCACCTCATTCAGGCTGGAAGGGAGAGACTC GGAGCAGTCGGGCTCTCTGCGTGTCAGGGAACACATCGATGCTAGAGACCTGCGATTCAG GCGATCAGTTCAAGAAGATAATCCGAAAGCCTGATGATTCTTGTGGTACCCAGACAGCAA CCACATAAAGGAAAGACGAGAAGGATGGACCGGCTTCCTCCAGACACCTGGCCCTTTAGA AGCCTCCCGGATGGGAAATTCCAAGCCTTTAGCCAGGAGTGGAAACTGATTTGACGTCAA TACTGGTGTAAAATTGAGCAGTCCCTGCTGGTTCTTTTATACCTGAATAGCTGACTTTGT CAGACAAAAATATTTGAGATTTTCCACTAAAGACTGTTGTTGTATGTGAACAAATTCACA AAATGGGAAGAGATATGCCAAGAATGATGTCATTTATCTTTAAGAGATATACTTATGAAT GATTGATCCTTAGAAATCCCTCCTCCCAGAACACCCAGACCTGGCAAAGGTTTGCAAACA GGTGCTCAGACAAGTGGTCCAGCTTGAATAAAAATGTGACCCTCAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGGAGGTTGAAGCCTTCCGCCGGCTGTGGCCCGTTTCGAGGTCTGCCCTTCTTCATTCA GTCCATCTACAGCTGGATCGACACCCTGAGTAAAAGGCCCAGCTACCTGTGGGTCGTTTG GATCTACCAGAACCTCATCGGAAGCGTGCACTTCTTCTTCATCCTCACCCTCATCGTGTT AATCATCACTTACCTTTACTGGCAGATCACAGAGGGAAGGAAGATTATGATCAGACTGCT CCATGAACAGATCATCAATGAGGGCAAAGACAAAATGTTCCTGATAGAAAAGTTACTCAA GCTGCAGGATACAGAGAAGAGAGCAAACTCCACCTCATTCAGGCTGGAAGGGAGAGACTC GGAGCAGTCGGGCTCTCTGCGTGTCAGGGAACACATCGATGCTAGAGACCTGCGATTCAG GCGATCAGTTCAAGAAGATAATCCGAAAGCCTGATGATTCTTGTGGTACCCAGACAGCAA CCACATAAAGGAAAGACGAGAAGGATGGACCGGCTTCCTCCAGACACCTGGCCCTTTAGA AGCCTCCCGGATGGGAAATTCCAAGCCTTTAGCCAGGAGTGGAAACTGATTTGACGTCAA TACTGGTGTAAAATTGAGCAGTCCCTGCTGGTTCTTTTATACCTGAATAGCTGACTTTGT CAGACAAAAATATTTGAGATTTTCCACTAAAGACTGTTGTTGTATGTGAACAAATTCACA AAATGGGAAGAGATATGCCAAGAATGATGTCATTTATCTTTAAGAGATATACTTATGAAT GATTGATCCTTAGAAATCCCTCCTCCCAGAACACCCAGACCTGGCAAAGGTTTGCAAACA GGTGCTCAGACAAGTGGTCCAGCTTGAATAAAAATGTGACCCTCAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 5-180, gnl|bosTau2|chr25 (16763150-16763325) | |
| 5-180, gnl|canFam2|chr6 (28802393-28802182) | |
| 5-180, gnl|dasNov1|scaffold_77072 (1754-1543) | |
| 5-180, gnl|echTel1|scaffold_166135 (6132-6343) | |
| 5-180, gnl|fr1|chrUn (84581807-84582013) | |
| 5-180, gnl|galGal2|chr14 (10701298-10701493) | |
| 5-180, gnl|hg17|chr16 (19409189-19409399) | |
| 5-180, gnl|Hg17|chr16 (19409216-19409391) | |
| 5-180, gnl|loxAfr1|scaffold_218714 (335-124) | |
| 5-180, gnl|mm7|chr7 (114591713-114591921) | |
| 5-180, gnl|Mm7|chr7 (114591738-114591913) | |
| 5-180, gnl|monDom2|scaffold_19 (39612400-39612610) | |
| 5-180, gnl|panTro1|chr18 (19871626-19871836) | |
| 5-180, gnl|rheMac2|chr20 (18461795-18462005) | |
| 5-180, gnl|tetNig1|chr18 (4759836-4760040) | |
| 260-364, gnl|bosTau2|chr25 (16771679-16771783) | |
| 260-364, gnl|canFam2|chr6 (28795992-28795852) | |
| 260-364, gnl|dasNov1|scaffold_62045 (3081-2940) | |
| 260-364, gnl|echTel1|scaffold_293188 (5357-5218) | |
| 260-364, gnl|galGal2|chr14 (10703061-10703190) | |
| 260-364, gnl|hg17|chr16 (19413062-19413206) | |
| 260-364, gnl|Hg17|chr16 (19413085-19413189) | |
| 260-364, gnl|loxAfr1|scaffold_452 (191237-191096) | |
| 260-364, gnl|mm7|chr7 (114594729-114594868) | |
| 260-364, gnl|Mm7|chr7 (114594748-114594852) | |
| 260-364, gnl|monDom2|scaffold_19 (39615969-39616108) | |
| 260-364, gnl|oryCun1|scaffold_200290 (41270-41128) | |
| 260-364, gnl|panTro1|chr18 (19875430-19875574) | |
| 260-364, gnl|rheMac2|chr20 (18466167-18466311) | |
| 406-885, gnl|bosTau2|chr25 (16773773-16774239) | |
| 406-885, gnl|canFam2|chr6 (28793725-28793153) | |
| 406-885, gnl|dasNov1|scaffold_62045 (1043-441) | |
| 406-885, gnl|echTel1|scaffold_293188 (3042-2455) | |
| 406-885, gnl|hg17|chr16 (19416702-19417309) | |
| 406-885, gnl|Hg17|chr16 (19416741-19417219) | |
| 406-885, gnl|loxAfr1|scaffold_452 (189193-188560) | |
| 406-885, gnl|mm7|chr7 (114597149-114597741) | |
| 406-885, gnl|Mm7|chr7 (114597188-114597651) | |
| 406-885, gnl|panTro1|chr18 (19878756-19879363) | |
| 406-885, gnl|rheMac2|chr20 (18469428-18470035) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 5-180, gnl|bosTau2|chr25 (16763150-16763325) | |
| 5-180, gnl|canFam2|chr6 (28802393-28802182) | |
| 5-180, gnl|dasNov1|scaffold_77072 (1754-1543) | |
| 5-180, gnl|echTel1|scaffold_166135 (6132-6343) | |
| 5-180, gnl|fr1|chrUn (84581807-84582013) | |
| 5-180, gnl|galGal2|chr14 (10701298-10701493) | |
| 5-180, gnl|hg17|chr16 (19409189-19409399) | |
| 5-180, gnl|Hg17|chr16 (19409216-19409391) | |
| 5-180, gnl|loxAfr1|scaffold_218714 (335-124) | |
| 5-180, gnl|mm7|chr7 (114591713-114591921) | |
| 5-180, gnl|Mm7|chr7 (114591738-114591913) | |
| 5-180, gnl|monDom2|scaffold_19 (39612400-39612610) | |
| 5-180, gnl|panTro1|chr18 (19871626-19871836) | |
| 5-180, gnl|rheMac2|chr20 (18461795-18462005) | |
| 5-180, gnl|tetNig1|chr18 (4759836-4760040) | |
| 260-364, gnl|bosTau2|chr25 (16771679-16771783) | |
| 260-364, gnl|canFam2|chr6 (28795992-28795852) | |
| 260-364, gnl|dasNov1|scaffold_62045 (3081-2940) | |
| 260-364, gnl|echTel1|scaffold_293188 (5357-5218) | |
| 260-364, gnl|galGal2|chr14 (10703061-10703190) | |
| 260-364, gnl|hg17|chr16 (19413062-19413206) | |
| 260-364, gnl|Hg17|chr16 (19413085-19413189) | |
| 260-364, gnl|loxAfr1|scaffold_452 (191237-191096) | |
| 260-364, gnl|mm7|chr7 (114594729-114594868) | |
| 260-364, gnl|Mm7|chr7 (114594748-114594852) | |
| 260-364, gnl|monDom2|scaffold_19 (39615969-39616108) | |
| 260-364, gnl|oryCun1|scaffold_200290 (41270-41128) | |
| 260-364, gnl|panTro1|chr18 (19875430-19875574) | |
| 260-364, gnl|rheMac2|chr20 (18466167-18466311) | |
| 406-885, gnl|bosTau2|chr25 (16773773-16774239) | |
| 406-885, gnl|canFam2|chr6 (28793725-28793153) | |
| 406-885, gnl|dasNov1|scaffold_62045 (1043-441) | |
| 406-885, gnl|echTel1|scaffold_293188 (3042-2455) | |
| 406-885, gnl|hg17|chr16 (19416702-19417309) | |
| 406-885, gnl|Hg17|chr16 (19416741-19417219) | |
| 406-885, gnl|loxAfr1|scaffold_452 (189193-188560) | |
| 406-885, gnl|mm7|chr7 (114597149-114597741) | |
| 406-885, gnl|Mm7|chr7 (114597188-114597651) | |
| 406-885, gnl|panTro1|chr18 (19878756-19879363) | |
| 406-885, gnl|rheMac2|chr20 (18469428-18470035) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| ill (0.526778) | |
| sin (0.174948) | |
| duo (0.172801) | |
| nje (0.16592) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ill (0.526778) | |
| sin (0.174948) | |
| duo (0.172801) | |
| nje (0.16592) |