Non-Coding RNA Search

Ss1.1-Pig3-SRG8009E18.5

Sequence:


               
               TTCGATCCCTAGGCTGGGAACTTCCATGTGCTGCAGATATGACCCTAAAAAAGAAAAAAA
AAATTACAGCTCCCATACTTGTAGTTAGGAAACTCAGTAGCTAATATAAGTAGCATATTT
TACTTTCAAATCCATTGATCTGACTGAAATACTGTCTGCCAGTAAGATCGAAAAGCGAGA
TTTGTTTTGAATGATTTGCTTGATTTTTCGGCACTGGTGATGTTCTTGCTTACGAAGACA
GAGAGCATTCAGGCATCCCAGCTTATCCTAGTCACTGAGATGTTAGCACAATTTTAACAG
CACATATGCTTTAATTTATCTCTCGTCTGCTAGTGTGATCAGACCCAGTTACAGTGGCGC
TCCACGATTCCAAGTGCTAGGGTTTCTGTGACATTCAGAATGATGCTTCCCAGAACTCAT
ATATTCCTTAAGAAAAATGGGGAGGAAAAGCCCAGCAGAAATTGAATTCTCATCATTTTT
GCTGTCAATAAATGTTCGCTGGGTATCTCTTACATTCTGCAAACATTACCTACATAGGAC
ATATTACAATCCATGCCATCTCTTCTTTGAGTTGTTTTATGGCTTCCCTTAAGGCATAAC
ACAAGCCATAGACTTACAATAGATGAGTATTTTTATTATTTGTATTTAGTGTCAATGGTA
GCATAAATGTGCACAATATCAGTATCGACTTTTGGAGGTCACTGATTATTTTCATAGATG
ATACATCTGGGGGGGGGAGTAAACAACATGAAAGCTTTGAATTATGGTTATTTAAAAACT
AATGTATTTGCTGTGGCCAAAATGTTGACAATAAGCAATAAAATGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCGATCCCTAGGCTGGGAACTTCCATGTGCTGCAGATATGACCCTAAAAAAGAAAAAAA
AAATTACAGCTCCCATACTTGTAGTTAGGAAACTCAGTAGCTAATATAAGTAGCATATTT
TACTTTCAAATCCATTGATCTGACTGAAATACTGTCTGCCAGTAAGATCGAAAAGCGAGA
TTTGTTTTGAATGATTTGCTTGATTTTTCGGCACTGGTGATGTTCTTGCTTACGAAGACA
GAGAGCATTCAGGCATCCCAGCTTATCCTAGTCACTGAGATGTTAGCACAATTTTAACAG
CACATATGCTTTAATTTATCTCTCGTCTGCTAGTGTGATCAGACCCAGTTACAGTGGCGC
TCCACGATTCCAAGTGCTAGGGTTTCTGTGACATTCAGAATGATGCTTCCCAGAACTCAT
ATATTCCTTAAGAAAAATGGGGAGGAAAAGCCCAGCAGAAATTGAATTCTCATCATTTTT
GCTGTCAATAAATGTTCGCTGGGTATCTCTTACATTCTGCAAACATTACCTACATAGGAC
ATATTACAATCCATGCCATCTCTTCTTTGAGTTGTTTTATGGCTTCCCTTAAGGCATAAC
ACAAGCCATAGACTTACAATAGATGAGTATTTTTATTATTTGTATTTAGTGTCAATGGTA
GCATAAATGTGCACAATATCAGTATCGACTTTTGGAGGTCACTGATTATTTTCATAGATG
ATACATCTGGGGGGGGGAGTAAACAACATGAAAGCTTTGAATTATGGTTATTTAAAAACT
AATGTATTTGCTGTGGCCAAAATGTTGACAATAAGCAATAAAATGAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               256-359, + strand, RNAz p=0.867866

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               256-359, + strand, RNAz p=0.867866

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               82-828, gnl|bosTau2|chr1 (5402982-5402223)
               

               
               82-828, gnl|canFam2|chr31 (24870505-24871308)
               

               
               82-828, gnl|dasNov1|scaffold_18836 (42855-43584)
               

               
               82-828, gnl|echTel1|scaffold_228901 (4541-3737)
               

               
               82-828, gnl|hg17|chr21 (26760414-26761252)
               

               
               82-828, gnl|Hg17|chr21 (26761224-26760423)
               

               
               82-828, gnl|loxAfr1|scaffold_15570 (11657-10829)
               

               
               82-828, gnl|mm7|chr16 (85448787-85449590)
               

               
               82-828, gnl|Mm7|chr16 (85449563-85446277)
               

               
               82-828, gnl|oryCun1|scaffold_138312 (3877-4660)
               

               
               82-828, gnl|panTro1|chr22 (26759153-26759990)
               

               
               82-828, gnl|rheMac2|chr3 (20199311-20198471)
               

               
               82-828, gnl|rn3|chr11 (25036799-25037592)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               82-828, gnl|bosTau2|chr1 (5402982-5402223)
               

               
               82-828, gnl|canFam2|chr31 (24870505-24871308)
               

               
               82-828, gnl|dasNov1|scaffold_18836 (42855-43584)
               

               
               82-828, gnl|echTel1|scaffold_228901 (4541-3737)
               

               
               82-828, gnl|hg17|chr21 (26760414-26761252)
               

               
               82-828, gnl|Hg17|chr21 (26761224-26760423)
               

               
               82-828, gnl|loxAfr1|scaffold_15570 (11657-10829)
               

               
               82-828, gnl|mm7|chr16 (85448787-85449590)
               

               
               82-828, gnl|Mm7|chr16 (85449563-85446277)
               

               
               82-828, gnl|oryCun1|scaffold_138312 (3877-4660)
               

               
               82-828, gnl|panTro1|chr22 (26759153-26759990)
               

               
               82-828, gnl|rheMac2|chr3 (20199311-20198471)
               

               
               82-828, gnl|rn3|chr11 (25036799-25037592)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               fcc (0.197785)
               

               
               pty (0.142714)
               

               
               csk (0.140746)
               

               
               ste (0.135208)
               

               
               clu (0.119646)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               pty (0.142714)
               

               
               csk (0.140746)
               

               
               ste (0.135208)
               

               
               clu (0.119646)

	82-828, gnl\|bosTau2\|chr1 (5402982-5402223)
	82-828, gnl\|canFam2\|chr31 (24870505-24871308)
	82-828, gnl\|dasNov1\|scaffold_18836 (42855-43584)
	82-828, gnl\|echTel1\|scaffold_228901 (4541-3737)
	82-828, gnl\|hg17\|chr21 (26760414-26761252)
	82-828, gnl\|Hg17\|chr21 (26761224-26760423)
	82-828, gnl\|loxAfr1\|scaffold_15570 (11657-10829)
	82-828, gnl\|mm7\|chr16 (85448787-85449590)
	82-828, gnl\|Mm7\|chr16 (85449563-85446277)
	82-828, gnl\|oryCun1\|scaffold_138312 (3877-4660)
	82-828, gnl\|panTro1\|chr22 (26759153-26759990)
	82-828, gnl\|rheMac2\|chr3 (20199311-20198471)
	82-828, gnl\|rn3\|chr11 (25036799-25037592)

	fcc (0.197785)
	pty (0.142714)
	csk (0.140746)
	ste (0.135208)
	clu (0.119646)