Non-Coding RNA Search

Ss1.1-Pig3-SRG8009F17.5

Sequence:


               
               GCACGAGGAGGGCCTTCTGGTGGCTGGTTCTCGCTGGCTGGGGGCTGCCCCTGCTCTTCA
CTGGCACGTGGGTGGGTTGCAAGTTGGCCTTTGAGGATGTTGCGTGCTGGGATCTGGACG
ACAGCTCCCCCTACTGGTGGATCATCAAAGGGCCCATCGTCCTCTCCGTGGGGGTGAACT
TTGGGCTTTTTCTCAATATTATCCGCATCCTGCTGAGGAAACTGGAGCCAGCTCAGGGCA
GCCTCCACACCCAGCCTCAGTACTGGCGTCTCTCCAAGTCAACCCTTCTCCTCATCCCAC
TGTTTGGAATTCACTACGTCATCTTCAACTTCCTGCCTGACAGTGCTGGCCTGGGCATCC
GCCTCCCCCTGGAGCTGGGACTGGGCTCCTTCCAGGGCTTCATTGTTGCCATCCTGTACT
GCTTCCTCAACCAAGAGGTGAGAACTGAGATCTCACGGAGGTGGCATGGCCATGACCCTG
AACTTCTGCCAGCCTGGAGGACTCACGCCAAATGGGCAAAGCCTTCCCGCTCAAGGGCGA
AGGTGCTGACAACTGTGTGCTAAGCTGCCCTTGTCACACACCTGGAATCCACACCTGAAC
GTGGGCAGCGGCTTGGGTCCACCCTCCTCCAGAGGAGGGGGACCAGCCCCATGCCCCCCA
GGAACCCTCCGTTCGTGCCCTTGCCCAGGCTGCAGTCCAGCCCTTCTTTCCTGTCCTGCC
TCTGACTCTTTGGCCTGAGTCCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCACGAGGAGGGCCTTCTGGTGGCTGGTTCTCGCTGGCTGGGGGCTGCCCCTGCTCTTCA
CTGGCACGTGGGTGGGTTGCAAGTTGGCCTTTGAGGATGTTGCGTGCTGGGATCTGGACG
ACAGCTCCCCCTACTGGTGGATCATCAAAGGGCCCATCGTCCTCTCCGTGGGGGTGAACT
TTGGGCTTTTTCTCAATATTATCCGCATCCTGCTGAGGAAACTGGAGCCAGCTCAGGGCA
GCCTCCACACCCAGCCTCAGTACTGGCGTCTCTCCAAGTCAACCCTTCTCCTCATCCCAC
TGTTTGGAATTCACTACGTCATCTTCAACTTCCTGCCTGACAGTGCTGGCCTGGGCATCC
GCCTCCCCCTGGAGCTGGGACTGGGCTCCTTCCAGGGCTTCATTGTTGCCATCCTGTACT
GCTTCCTCAACCAAGAGGTGAGAACTGAGATCTCACGGAGGTGGCATGGCCATGACCCTG
AACTTCTGCCAGCCTGGAGGACTCACGCCAAATGGGCAAAGCCTTCCCGCTCAAGGGCGA
AGGTGCTGACAACTGTGTGCTAAGCTGCCCTTGTCACACACCTGGAATCCACACCTGAAC
GTGGGCAGCGGCTTGGGTCCACCCTCCTCCAGAGGAGGGGGACCAGCCCCATGCCCCCCA
GGAACCCTCCGTTCGTGCCCTTGCCCAGGCTGCAGTCCAGCCCTTCTTTCCTGTCCTGCC
TCTGACTCTTTGGCCTGAGTCCCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9HB43_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9HB43_HUMAN

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               435-634, gnl|bosTau2|chr4 (36335541-36335740)
               

               
               435-634, gnl|canFam2|chr14 (46593713-46593926)
               

               
               435-634, gnl|dasNov1|scaffold_8224 (48635-48835)
               

               
               435-634, gnl|echTel1|scaffold_90097 (1595-1805)
               

               
               435-634, gnl|hg17|chr7 (30791942-30792143)
               

               
               435-634, gnl|Hg17|chr7 (30791971-30792170)
               

               
               435-634, gnl|loxAfr1|scaffold_97326 (6138-5936)
               

               
               435-634, gnl|mm7|chr6 (55351507-55351710)
               

               
               435-634, gnl|Mm7|chr6 (55351536-55351718)
               

               
               435-634, gnl|panTro1|chr6 (31896578-31896779)
               

               
               435-634, gnl|rheMac2|chr3 (95244816-95244615)
               

               
               435-634, gnl|rn3|chr4 (84434486-84434687)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               435-634, gnl|bosTau2|chr4 (36335541-36335740)
               

               
               435-634, gnl|canFam2|chr14 (46593713-46593926)
               

               
               435-634, gnl|dasNov1|scaffold_8224 (48635-48835)
               

               
               435-634, gnl|echTel1|scaffold_90097 (1595-1805)
               

               
               435-634, gnl|hg17|chr7 (30791942-30792143)
               

               
               435-634, gnl|Hg17|chr7 (30791971-30792170)
               

               
               435-634, gnl|loxAfr1|scaffold_97326 (6138-5936)
               

               
               435-634, gnl|mm7|chr6 (55351507-55351710)
               

               
               435-634, gnl|Mm7|chr6 (55351536-55351718)
               

               
               435-634, gnl|panTro1|chr6 (31896578-31896779)
               

               
               435-634, gnl|rheMac2|chr3 (95244816-95244615)
               

               
               435-634, gnl|rn3|chr4 (84434486-84434687)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               duo (0.172801)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               duo (0.172801)

	435-634, gnl\|bosTau2\|chr4 (36335541-36335740)
	435-634, gnl\|canFam2\|chr14 (46593713-46593926)
	435-634, gnl\|dasNov1\|scaffold_8224 (48635-48835)
	435-634, gnl\|echTel1\|scaffold_90097 (1595-1805)
	435-634, gnl\|hg17\|chr7 (30791942-30792143)
	435-634, gnl\|Hg17\|chr7 (30791971-30792170)
	435-634, gnl\|loxAfr1\|scaffold_97326 (6138-5936)
	435-634, gnl\|mm7\|chr6 (55351507-55351710)
	435-634, gnl\|Mm7\|chr6 (55351536-55351718)
	435-634, gnl\|panTro1\|chr6 (31896578-31896779)
	435-634, gnl\|rheMac2\|chr3 (95244816-95244615)
	435-634, gnl\|rn3\|chr4 (84434486-84434687)