Non-Coding RNA Search

Ss1.1-Pig3-SRG8009H01.3

Sequence:


               
               GATAAGGATGGAGATAAGAGCCCCATGTCCCCACTACAGATCTCCACTGAGAAGAACATG
GAGCCTGGCAAAGGGATCAGCAGGTCTTCAGGGGAGCAGCGAAGCAAAGCACTTGGGGTG
TCGCCATCTTCACTGTCAGAAGAGCCCCCGGCCCCCTCCAGCATTGATGCTGAAAGCAGT
GGCGAGCGTCTCGAGGAGTTGCCCCTGGAGGAGGAGAGCCCTGCGTCTCAGCTCTTTGAG
CTAGAGATTGAAGCCTTGCCCCTGGATACTACCCCGTCCCCTGAGGAGAGGGATGTGTCG
TCTTCCAGGAAGCCATCCGAGGAGCCCCTCACCACTGTCCTGGAGAACGGAGCAGCCATG
GTCACCTCCACTTCCTTCAATGGCGGTGTCTCTCCACACACCTGGGGGGACTGCATTCCC
CCCTGCAAGAAATCTCGGAGGGAGAAGCCAAGAGAAACAGGGCCATTAGGAAACAGCTGC
GTGGCAAGGCCAAGGGCAGTGCGAGAGAAGGAGGGGAAGAGGACGCGGGCCCTGCCCAGC
CCCCCTTCCCCCTTGGCCTCCGTGGCTCCGGTTGCTGACTCCTCGACCAGGGTGGACTCT
CCCAGCCACGGCCTGGTGACCAGCTCCCTCTCTAGCCCATGTCCAGCCCGGTTGGCCCAG
AACCCCCAGGCCCAGCCCTCCAGACCCAGTACCTGTAAGATGAGTGTGGCCACGCAGTGC
GACCCCGAGGAGATCATCGTGCTCTCGGACTCCGACTAGCTGCCCCCGCGCTCCCTGCTC
CACTGCGCTCGGGACAGAGGATGGAGGCAGGAGGCACTGAGCTGGTCCCCGTTTGGTGGT
TTCTTTTAAAAACACAAAGCTTAAGTTTTACACAGAAACATTAATAAACAATAAAGTTCT
TTTCTTATGGTAAAAAAAAAAAAAAAAAAAAAAAAATTCCTGCGGCCGCACACCCACCCA
GGACACAGCCAAAACCCCCAGCAAGGTGACAGCCCAACCCCCTCAGCCCCCACTACCCCG
ACGCTCGAGCCGCCTCAAAACCTGATGGAGGGGGCGCCCCACACCCACCCCGTCTGGGTC
CAGATCTGCTAAGCTTCTTAGGAATCTGTGTGGAGACTTTGACATGGTGTTTTACTCAAA
ATCAAATAAAAAAAGGTAGTTTGGGAGTTCCCATCGTGGCACAGCAGAAACGAATCCAAC
TAGGAACCATGAGGTTGTGGGTTCGATCCCTGGCCTCCCTCAGTGGGTTAAGGATCTGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATAAGGATGGAGATAAGAGCCCCATGTCCCCACTACAGATCTCCACTGAGAAGAACATG
GAGCCTGGCAAAGGGATCAGCAGGTCTTCAGGGGAGCAGCGAAGCAAAGCACTTGGGGTG
TCGCCATCTTCACTGTCAGAAGAGCCCCCGGCCCCCTCCAGCATTGATGCTGAAAGCAGT
GGCGAGCGTCTCGAGGAGTTGCCCCTGGAGGAGGAGAGCCCTGCGTCTCAGCTCTTTGAG
CTAGAGATTGAAGCCTTGCCCCTGGATACTACCCCGTCCCCTGAGGAGAGGGATGTGTCG
TCTTCCAGGAAGCCATCCGAGGAGCCCCTCACCACTGTCCTGGAGAACGGAGCAGCCATG
GTCACCTCCACTTCCTTCAATGGCGGTGTCTCTCCACACACCTGGGGGGACTGCATTCCC
CCCTGCAAGAAATCTCGGAGGGAGAAGCCAAGAGAAACAGGGCCATTAGGAAACAGCTGC
GTGGCAAGGCCAAGGGCAGTGCGAGAGAAGGAGGGGAAGAGGACGCGGGCCCTGCCCAGC
CCCCCTTCCCCCTTGGCCTCCGTGGCTCCGGTTGCTGACTCCTCGACCAGGGTGGACTCT
CCCAGCCACGGCCTGGTGACCAGCTCCCTCTCTAGCCCATGTCCAGCCCGGTTGGCCCAG
AACCCCCAGGCCCAGCCCTCCAGACCCAGTACCTGTAAGATGAGTGTGGCCACGCAGTGC
GACCCCGAGGAGATCATCGTGCTCTCGGACTCCGACTAGCTGCCCCCGCGCTCCCTGCTC
CACTGCGCTCGGGACAGAGGATGGAGGCAGGAGGCACTGAGCTGGTCCCCGTTTGGTGGT
TTCTTTTAAAAACACAAAGCTTAAGTTTTACACAGAAACATTAATAAACAATAAAGTTCT
TTTCTTATGGTAAAAAAAAAAAAAAAAAAAAAAAAATTCCTGCGGCCGCACACCCACCCA
GGACACAGCCAAAACCCCCAGCAAGGTGACAGCCCAACCCCCTCAGCCCCCACTACCCCG
ACGCTCGAGCCGCCTCAAAACCTGATGGAGGGGGCGCCCCACACCCACCCCGTCTGGGTC
CAGATCTGCTAAGCTTCTTAGGAATCTGTGTGGAGACTTTGACATGGTGTTTTACTCAAA
ATCAAATAAAAAAAGGTAGTTTGGGAGTTCCCATCGTGGCACAGCAGAAACGAATCCAAC
TAGGAACCATGAGGTTGTGGGTTCGATCCCTGGCCTCCCTCAGTGGGTTAAGGATCTGGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61878671|ref|XP_612210.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61878671|ref|XP_612210.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               200-476, - strand, RNAz p=0.985971

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               200-476, - strand, RNAz p=0.985971

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               1-476, gnl|bosTau2|chr23 (5852098-5851626)
               

               
               1-476, gnl|Hg17|chr6 (33395610-33395135)
               

               
               1-476, gnl|Mm7|chr17 (31991582-31992035)
               


               
               481-709, gnl|bosTau2|chr23 (5851464-5851239)
               

               
               481-709, gnl|Hg17|chr6 (33394970-33394742)
               

               
               481-709, gnl|Mm7|chr17 (31992156-31992378)
               


               
               955-1164, gnl|bosTau2|chr11 (77650661-77650448)
               

               
               955-1164, gnl|canFam2|chr9 (58663022-58662857)
               

               
               955-1164, gnl|dasNov1|scaffold_1466 (111247-111411)
               

               
               955-1164, gnl|echTel1|scaffold_195299 (42-207)
               

               
               955-1164, gnl|hg17|chr9 (128007906-128008073)
               

               
               955-1164, gnl|Hg17|chr9 (128008114-128007905)
               

               
               955-1164, gnl|mm7|chr2 (32385608-32385437)
               

               
               955-1164, gnl|Mm7|chr2 (32385388-32385607)
               

               
               955-1164, gnl|monDom2|scaffold_51 (2670481-2670646)
               

               
               955-1164, gnl|oryCun1|scaffold_197045 (4567-4716)
               

               
               955-1164, gnl|panTro1|chr11_random (6146265-6146098)
               

               
               955-1164, gnl|rheMac2|chr15 (10718995-10718827)
               

               
               955-1164, gnl|rn3|chr3 (11400843-11400672)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-476, gnl|bosTau2|chr23 (5852098-5851626)
               

               
               1-476, gnl|Hg17|chr6 (33395610-33395135)
               

               
               1-476, gnl|Mm7|chr17 (31991582-31992035)
               


               
               481-709, gnl|bosTau2|chr23 (5851464-5851239)
               

               
               481-709, gnl|Hg17|chr6 (33394970-33394742)
               

               
               481-709, gnl|Mm7|chr17 (31992156-31992378)
               


               
               955-1164, gnl|bosTau2|chr11 (77650661-77650448)
               

               
               955-1164, gnl|canFam2|chr9 (58663022-58662857)
               

               
               955-1164, gnl|dasNov1|scaffold_1466 (111247-111411)
               

               
               955-1164, gnl|echTel1|scaffold_195299 (42-207)
               

               
               955-1164, gnl|hg17|chr9 (128007906-128008073)
               

               
               955-1164, gnl|Hg17|chr9 (128008114-128007905)
               

               
               955-1164, gnl|mm7|chr2 (32385608-32385437)
               

               
               955-1164, gnl|Mm7|chr2 (32385388-32385607)
               

               
               955-1164, gnl|monDom2|scaffold_51 (2670481-2670646)
               

               
               955-1164, gnl|oryCun1|scaffold_197045 (4567-4716)
               

               
               955-1164, gnl|panTro1|chr11_random (6146265-6146098)
               

               
               955-1164, gnl|rheMac2|chr15 (10718995-10718827)
               

               
               955-1164, gnl|rn3|chr3 (11400843-11400672)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               cag (0.302389)
               

               
               cga (0.279096)
               

               
               ill (0.175593)
               

               
               mcp (0.170648)
               

               
               pla (0.133672)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (0.302389)
               

               
               cga (0.279096)
               

               
               ill (0.175593)
               

               
               mcp (0.170648)
               

               
               pla (0.133672)

	1-476, gnl\|bosTau2\|chr23 (5852098-5851626)
	1-476, gnl\|Hg17\|chr6 (33395610-33395135)
	1-476, gnl\|Mm7\|chr17 (31991582-31992035)

	481-709, gnl\|bosTau2\|chr23 (5851464-5851239)
	481-709, gnl\|Hg17\|chr6 (33394970-33394742)
	481-709, gnl\|Mm7\|chr17 (31992156-31992378)

	955-1164, gnl\|bosTau2\|chr11 (77650661-77650448)
	955-1164, gnl\|canFam2\|chr9 (58663022-58662857)
	955-1164, gnl\|dasNov1\|scaffold_1466 (111247-111411)
	955-1164, gnl\|echTel1\|scaffold_195299 (42-207)
	955-1164, gnl\|hg17\|chr9 (128007906-128008073)
	955-1164, gnl\|Hg17\|chr9 (128008114-128007905)
	955-1164, gnl\|mm7\|chr2 (32385608-32385437)
	955-1164, gnl\|Mm7\|chr2 (32385388-32385607)
	955-1164, gnl\|monDom2\|scaffold_51 (2670481-2670646)
	955-1164, gnl\|oryCun1\|scaffold_197045 (4567-4716)
	955-1164, gnl\|panTro1\|chr11_random (6146265-6146098)
	955-1164, gnl\|rheMac2\|chr15 (10718995-10718827)
	955-1164, gnl\|rn3\|chr3 (11400843-11400672)

	cag (0.302389)
	cga (0.279096)
	ill (0.175593)
	mcp (0.170648)
	pla (0.133672)