Non-Coding RNA Search

Ss1.1-Pig3-SRG8009I19.3.5

Sequence:


               
               TACTATGTCATAGTGCTCCTGAGTTATGCATTACATCAGGTTACATTGTACAGCATGTAT
GTTTCCATAATGGCTTTCAATGCAAAGGTTAGTGATCCACTTATTGGAGGAACATACATG
ACCCTTTTAAATACTGTGTCCAACCTGGGAGGAAACTGGCCTTCTACAGTAGCTCTTTGG
CTGGTAGATCCCCTCACGGTGAAAGAATGTGTAGGAGCATCAAACCAGAATTGCCGAACA
CCTGATGCTGTTGAGCTTTGCAAAAAACTTGGTGGCTCTTGTGTTACAGCACTGGATGGT
TATTATGTGGAGTCTGTTATTTGTGTTTTTATTGGATTTGGTTGGTGGTTTTTGCTTGGT
CCAAAACTTAAAAAGTTACAGGATGAAGGACCATCTTCATGGAAGTGCAAAAGAAGCAAG
TAATGCATTCATTCACTACTGGACATTCTAGAAAGGTAACTATAATTTAGTTTTAACTCA
GAGAGCTATGATAATCAGTGTACAGGAATGTAAAATACTATTTTAAATAGTAAGTTATTA
CTATAAAATGCCAAATGATTAAAAAATAGAGATCTCCCTGTATATTTGATTATATTTTCC
TTGCCTTGTCAGTGTATTTAAAGTTTACTCAAGGCCAGGAAATTGGTACTAAAACAACTC
TTCTGACCTTGTTATTTGATTTATATCCTTTTAATTTACTGACCAAAGCTTGTTTTAAGC
TGCTACACAGTAGTCATGGGTGGTGACTGTGCAGTCAAGTATTGTTATCAGTACCTATCA
TTGAGCAACCTTTAAATTTTTGGTAAAATATATTAAAGGGAACAGAGCTTGATATTCAGG
TACTAACTACCACTAGTCTGGTCTTGTTGGCAGTTAATCTTATTTTGAATTGCAGATTGG
TTAAATTCTATGGGGAATTTGCTGAGAAGAGAATGTAAACTACTGAAAGGTCATTTTCAT
TGTTATTTTTCTGATCACAACTACATTGTACTAATGAATCTGTGTTAAAAGACTATTTTA
AATGTATTTCCTGCTTTTGTAAGCATTTAAGATTTATAAGAAGATTATTCAAACTATTTT
TTATAAAATAAAAGCTATGACTTTTAATTTATTGATTCCCCTTCCCACCCCCCTTTTTTG
GAAGATATTTTGATTCCTTGTTAAATTTTACCCTAAAGCTTACATATGTTTTTTGTTGTT
AAGTGCTTCATGGCACATGGACAGCTCATGAAGGGGTCACATTTAATGTTGTATGTATGT
TTATGGCAAACTTTTGAAAATAAAAGTTAAATGTTTTTGTTTTAGTAGTTTTTTTTATTA
CTGAGAGAAAAAACAGTAAAACTTACTGATTAAGTAAAATTTAAATGAGTAATACTATAA
TTTTAGAAACTAATGCTTTAAAGAGGAGAAAGACATTTTGTGCCATTGACAAATTATATG
GTGGAAAAAGTTTTCTTAATTAAGCACTTCACTAATGAGAAAAGATCTCACAATTACTTT
ATACCAAATCAGGTACTATTTTTCCACTTATTAAAATATAGTCTTTTGTTTGTAAACGAT
AGTTTCTACTGGAGAATCACTAACCCAGGAGAATTAATTTTTTGAATATTTTAGCAGTTT
TCAATATATTATGTGTACCTGGTAGTGAGATTTCTTGCATGTTTTGTGTTGTATAGTACT
CTGACTTTTTACAGAGATTACATAAATCTTTAAACGTTAAAGGAAAAGAGATTAAGTTGA
CTTTTTATTTAATAATTCTCTTTGTGGGAAAATACATACTAATGCCTGATTTTGTTAATT
TTATAGCATAGGTTGAATTTTAGAGAGGGATTTTTATAAGTAATGGAGGATAAAATGGTG
GTAGAAAATGGCACTCAGCATCTGAAGAAAGATAGAGGCAGTGGCTTCTAGAACTCATAC
ATTGCCAATGGAAAGCCTGTGTTGGGCATTGATGTCAGATCCAGAAGTATCATCTGGAAA
AATCATCCTAGAAACACATCAAACCATAGACCACAGTACTTTGTCACAGGAATTGTCCAT
TCTCATGTATTATAATAAAAATGTTTACTTGAATAAATAAAATCCACTTAACTCTTTTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TACTATGTCATAGTGCTCCTGAGTTATGCATTACATCAGGTTACATTGTACAGCATGTAT
GTTTCCATAATGGCTTTCAATGCAAAGGTTAGTGATCCACTTATTGGAGGAACATACATG
ACCCTTTTAAATACTGTGTCCAACCTGGGAGGAAACTGGCCTTCTACAGTAGCTCTTTGG
CTGGTAGATCCCCTCACGGTGAAAGAATGTGTAGGAGCATCAAACCAGAATTGCCGAACA
CCTGATGCTGTTGAGCTTTGCAAAAAACTTGGTGGCTCTTGTGTTACAGCACTGGATGGT
TATTATGTGGAGTCTGTTATTTGTGTTTTTATTGGATTTGGTTGGTGGTTTTTGCTTGGT
CCAAAACTTAAAAAGTTACAGGATGAAGGACCATCTTCATGGAAGTGCAAAAGAAGCAAG
TAATGCATTCATTCACTACTGGACATTCTAGAAAGGTAACTATAATTTAGTTTTAACTCA
GAGAGCTATGATAATCAGTGTACAGGAATGTAAAATACTATTTTAAATAGTAAGTTATTA
CTATAAAATGCCAAATGATTAAAAAATAGAGATCTCCCTGTATATTTGATTATATTTTCC
TTGCCTTGTCAGTGTATTTAAAGTTTACTCAAGGCCAGGAAATTGGTACTAAAACAACTC
TTCTGACCTTGTTATTTGATTTATATCCTTTTAATTTACTGACCAAAGCTTGTTTTAAGC
TGCTACACAGTAGTCATGGGTGGTGACTGTGCAGTCAAGTATTGTTATCAGTACCTATCA
TTGAGCAACCTTTAAATTTTTGGTAAAATATATTAAAGGGAACAGAGCTTGATATTCAGG
TACTAACTACCACTAGTCTGGTCTTGTTGGCAGTTAATCTTATTTTGAATTGCAGATTGG
TTAAATTCTATGGGGAATTTGCTGAGAAGAGAATGTAAACTACTGAAAGGTCATTTTCAT
TGTTATTTTTCTGATCACAACTACATTGTACTAATGAATCTGTGTTAAAAGACTATTTTA
AATGTATTTCCTGCTTTTGTAAGCATTTAAGATTTATAAGAAGATTATTCAAACTATTTT
TTATAAAATAAAAGCTATGACTTTTAATTTATTGATTCCCCTTCCCACCCCCCTTTTTTG
GAAGATATTTTGATTCCTTGTTAAATTTTACCCTAAAGCTTACATATGTTTTTTGTTGTT
AAGTGCTTCATGGCACATGGACAGCTCATGAAGGGGTCACATTTAATGTTGTATGTATGT
TTATGGCAAACTTTTGAAAATAAAAGTTAAATGTTTTTGTTTTAGTAGTTTTTTTTATTA
CTGAGAGAAAAAACAGTAAAACTTACTGATTAAGTAAAATTTAAATGAGTAATACTATAA
TTTTAGAAACTAATGCTTTAAAGAGGAGAAAGACATTTTGTGCCATTGACAAATTATATG
GTGGAAAAAGTTTTCTTAATTAAGCACTTCACTAATGAGAAAAGATCTCACAATTACTTT
ATACCAAATCAGGTACTATTTTTCCACTTATTAAAATATAGTCTTTTGTTTGTAAACGAT
AGTTTCTACTGGAGAATCACTAACCCAGGAGAATTAATTTTTTGAATATTTTAGCAGTTT
TCAATATATTATGTGTACCTGGTAGTGAGATTTCTTGCATGTTTTGTGTTGTATAGTACT
CTGACTTTTTACAGAGATTACATAAATCTTTAAACGTTAAAGGAAAAGAGATTAAGTTGA
CTTTTTATTTAATAATTCTCTTTGTGGGAAAATACATACTAATGCCTGATTTTGTTAATT
TTATAGCATAGGTTGAATTTTAGAGAGGGATTTTTATAAGTAATGGAGGATAAAATGGTG
GTAGAAAATGGCACTCAGCATCTGAAGAAAGATAGAGGCAGTGGCTTCTAGAACTCATAC
ATTGCCAATGGAAAGCCTGTGTTGGGCATTGATGTCAGATCCAGAAGTATCATCTGGAAA
AATCATCCTAGAAACACATCAAACCATAGACCACAGTACTTTGTCACAGGAATTGTCCAT
TCTCATGTATTATAATAAAAATGTTTACTTGAATAAATAAAATCCACTTAACTCTTTTAT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61848517|ref|XP_593758.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61848517|ref|XP_593758.1|

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               254-2091, gnl|bosTau2|chr19 (7554869-7553027)
               

               
               254-2091, gnl|Hg17|chr3 (157028870-157027017)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               254-2091, gnl|bosTau2|chr19 (7554869-7553027)
               

               
               254-2091, gnl|Hg17|chr3 (157028870-157027017)

Expressed library(ies): 18 entry(ies)

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Expressed library(ies): 18 entry(ies)

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               liv (0.585137)
               

               
               amn (0.417711)
               

               
               lyg (0.266205)
               

               
               kid (0.259471)
               

               
               sug (0.254582)
               

               
               spc (0.226732)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)
               

               
               cty (0.10408)

Expressed library(ies): 18 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.585137)
               

               
               amn (0.417711)
               

               
               lyg (0.266205)
               

               
               kid (0.259471)
               

               
               sug (0.254582)
               

               
               spc (0.226732)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)
               

               
               cty (0.10408)

	254-2091, gnl\|bosTau2\|chr19 (7554869-7553027)
	254-2091, gnl\|Hg17\|chr3 (157028870-157027017)

	liv (0.585137)
	amn (0.417711)
	lyg (0.266205)
	kid (0.259471)
	sug (0.254582)
	spc (0.226732)
	mgm (0.180343)
	gul (0.177588)
	sin (0.174948)
	fat (0.147427)
	lin (0.145603)
	spl (0.143184)
	hyp (0.142837)
	ret (0.128733)
	thg (0.126791)
	bla (0.124347)
	pgl (0.118483)
	cty (0.10408)