Ss1.1-Pig3-SRG8009P13.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCTTTCCTCTGGAGGACCAGCCCTCTAGGGTCTCCGAGGAACAATGGAAGTCTTGGGGT TTCTCAGCCCGGAACTGAATGGCCCAATGGTGACGATGGCCTTGGCAGTTGTCCTCCTGG CCCTCCTGAAGTGGTACTCCACATCGGCATTTTCAAGACTAGAGAAGCTGGGCATCAGGC ATCCCAAGCCTTCTCCTTTTATTGGCAACTTGACATTTTTCCGCCAGGGTTTCTGGGAAA GCCACATGGAGCTCAGAAAGCAGTATGGACCTCTGAGTGGGTACTATCTTGGTCGCCGGA TGATTGTCGTCATCTCTGACCCAGACATGATCAAGCAGGTGTTGGCTGAGAAGTTCAGCA ACTTTACCAACAGAATGGCCACAGGATTGGAATCCAAGCCGGTAGCTGACAGCATCCTGT TTTTACGTGACAAAAGATGGGAAGAGGTCCGAAGTGTCCTGACTTCTGCTTTCAGTCCTA AAAAGTTGAATAAGCTGACTCCTCTCATCAGCCAAGCCTGTGACCTGCTCCTGGCTCACC TAGAGCGCTATGCGGAATCCGGGGATGCCTTCGACATCCAGAGGTGCTACTGCTGCTACA CCACTGATGTGGTTGCCAGCGTTGCCTTCGGCACCCAGGTGAACTCCAGCGAGGAGCCTG AGCACCCCTTTGTGAAGCACTGCTGGCGCTTCTTTGCATTCTCCGTCCCCAGACTTATCC TCGTTTTAATCCTATCATTTCCATCCATAATGGTCCCACTGGCCCGGATTTTGCCCAATA AGAAGCGAGATGAAGTGAATGGCTTTTTTAACAAACTCATTAGGAATGTGATTGCCTTGC GGGACCAGCAAGCAGCAGAAGAGAGGCGGCAAGATTTCCTCCAAATGGTTCTGGATTTGC GACATTCCGCCCCCTCCGTGGGCGTGGAGAACTTTGACATTGTCCGTCAAGTCTTCTCCT CTGCCAAAGGGTGCCCAGCCAACCCTTCCCAACCACACCTGCCCAGACCTCTGTCCAAGC CTCTGACGGTGGACGAGGTGGTGGGCCAGGCCTTCCTCTTCCTCATCGCTGGCTACGAGA TTATCACCAACACCCTGTCCTTCGTCACCTACCTCCTGGCCACCAACCCTGACTGTCAAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCTTTCCTCTGGAGGACCAGCCCTCTAGGGTCTCCGAGGAACAATGGAAGTCTTGGGGT TTCTCAGCCCGGAACTGAATGGCCCAATGGTGACGATGGCCTTGGCAGTTGTCCTCCTGG CCCTCCTGAAGTGGTACTCCACATCGGCATTTTCAAGACTAGAGAAGCTGGGCATCAGGC ATCCCAAGCCTTCTCCTTTTATTGGCAACTTGACATTTTTCCGCCAGGGTTTCTGGGAAA GCCACATGGAGCTCAGAAAGCAGTATGGACCTCTGAGTGGGTACTATCTTGGTCGCCGGA TGATTGTCGTCATCTCTGACCCAGACATGATCAAGCAGGTGTTGGCTGAGAAGTTCAGCA ACTTTACCAACAGAATGGCCACAGGATTGGAATCCAAGCCGGTAGCTGACAGCATCCTGT TTTTACGTGACAAAAGATGGGAAGAGGTCCGAAGTGTCCTGACTTCTGCTTTCAGTCCTA AAAAGTTGAATAAGCTGACTCCTCTCATCAGCCAAGCCTGTGACCTGCTCCTGGCTCACC TAGAGCGCTATGCGGAATCCGGGGATGCCTTCGACATCCAGAGGTGCTACTGCTGCTACA CCACTGATGTGGTTGCCAGCGTTGCCTTCGGCACCCAGGTGAACTCCAGCGAGGAGCCTG AGCACCCCTTTGTGAAGCACTGCTGGCGCTTCTTTGCATTCTCCGTCCCCAGACTTATCC TCGTTTTAATCCTATCATTTCCATCCATAATGGTCCCACTGGCCCGGATTTTGCCCAATA AGAAGCGAGATGAAGTGAATGGCTTTTTTAACAAACTCATTAGGAATGTGATTGCCTTGC GGGACCAGCAAGCAGCAGAAGAGAGGCGGCAAGATTTCCTCCAAATGGTTCTGGATTTGC GACATTCCGCCCCCTCCGTGGGCGTGGAGAACTTTGACATTGTCCGTCAAGTCTTCTCCT CTGCCAAAGGGTGCCCAGCCAACCCTTCCCAACCACACCTGCCCAGACCTCTGTCCAAGC CTCTGACGGTGGACGAGGTGGTGGGCCAGGCCTTCCTCTTCCTCATCGCTGGCTACGAGA TTATCACCAACACCCTGTCCTTCGTCACCTACCTCCTGGCCACCAACCCTGACTGTCAAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 374-494, + strand, RNAz p=0.908449 | |
| 582-731, - strand, RNAz p=0.842911 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 374-494, + strand, RNAz p=0.908449 | |
| 582-731, - strand, RNAz p=0.842911 |
| Aligned organism(s): 34 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
| 1-136, gnl|bosTau2|chr4 (56903720-56903855) | |
| 1-136, gnl|canFam2|chr16 (11987772-11987284) | |
| 1-136, gnl|dasNov1|scaffold_1733 (4310-3799) | |
| 1-136, gnl|echTel1|scaffold_291178 (311-765) | |
| 1-136, gnl|hg17|chr7 (138982007-138982490) | |
| 1-136, gnl|Hg17|chr7 (138982330-138982465) | |
| 1-136, gnl|loxAfr1|scaffold_61851 (5490-5969) | |
| 1-136, gnl|mm7|chr6 (38849700-38850194) | |
| 1-136, gnl|Mm7|chr6 (38850034-38850169) | |
| 1-136, gnl|monDom2|scaffold_22 (2386099-2385596) | |
| 1-136, gnl|oryCun1|scaffold_83774 (4025-4485) | |
| 1-136, gnl|panTro1|chr6_random (11194328-11193845) | |
| 1-136, gnl|rheMac2|chr3 (177319665-177320148) | |
| 1-136, gnl|rn3|chr4 (66778132-66778628) | |
| 374-494, gnl|bosTau2|chr4 (57042048-57042168) | |
| 374-494, gnl|canFam2|chr16 (11907552-11907245) | |
| 374-494, gnl|dasNov1|scaffold_49474 (2807-3105) | |
| 374-494, gnl|galGal2|chr1 (52554037-52553731) | |
| 374-494, gnl|hg17|chr7 (139089121-139089433) | |
| 374-494, gnl|Hg17|chr7 (139089170-139089290) | |
| 374-494, gnl|loxAfr1|scaffold_89593 (6162-5858) | |
| 374-494, gnl|mm7|chr6 (38932137-38932432) | |
| 374-494, gnl|Mm7|chr6 (38932173-38932293) | |
| 374-494, gnl|monDom2|scaffold_22 (2277579-2277267) | |
| 374-494, gnl|oryCun1|scaffold_126577 (3909-4186) | |
| 374-494, gnl|panTro1|chr6 (141825495-141825808) | |
| 374-494, gnl|rheMac2|chr3 (177425536-177425848) | |
| 374-494, gnl|rn3|chr4 (66863997-66864304) | |
| 582-731, gnl|bosTau2|chr4 (57060584-57060733) | |
| 582-731, gnl|Hg17|chr7 (139108440-139108589) | |
| 582-731, gnl|Mm7|chr6 (38951962-38952111) | |
| 862-1140, gnl|bosTau2|chr4 (57067599-57067874) | |
| 862-1140, gnl|Hg17|chr7 (139114900-139115175) | |
| 862-1140, gnl|Mm7|chr6 (38958563-38958838) |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-136, gnl|bosTau2|chr4 (56903720-56903855) | |
| 1-136, gnl|canFam2|chr16 (11987772-11987284) | |
| 1-136, gnl|dasNov1|scaffold_1733 (4310-3799) | |
| 1-136, gnl|echTel1|scaffold_291178 (311-765) | |
| 1-136, gnl|hg17|chr7 (138982007-138982490) | |
| 1-136, gnl|Hg17|chr7 (138982330-138982465) | |
| 1-136, gnl|loxAfr1|scaffold_61851 (5490-5969) | |
| 1-136, gnl|mm7|chr6 (38849700-38850194) | |
| 1-136, gnl|Mm7|chr6 (38850034-38850169) | |
| 1-136, gnl|monDom2|scaffold_22 (2386099-2385596) | |
| 1-136, gnl|oryCun1|scaffold_83774 (4025-4485) | |
| 1-136, gnl|panTro1|chr6_random (11194328-11193845) | |
| 1-136, gnl|rheMac2|chr3 (177319665-177320148) | |
| 1-136, gnl|rn3|chr4 (66778132-66778628) | |
| 374-494, gnl|bosTau2|chr4 (57042048-57042168) | |
| 374-494, gnl|canFam2|chr16 (11907552-11907245) | |
| 374-494, gnl|dasNov1|scaffold_49474 (2807-3105) | |
| 374-494, gnl|galGal2|chr1 (52554037-52553731) | |
| 374-494, gnl|hg17|chr7 (139089121-139089433) | |
| 374-494, gnl|Hg17|chr7 (139089170-139089290) | |
| 374-494, gnl|loxAfr1|scaffold_89593 (6162-5858) | |
| 374-494, gnl|mm7|chr6 (38932137-38932432) | |
| 374-494, gnl|Mm7|chr6 (38932173-38932293) | |
| 374-494, gnl|monDom2|scaffold_22 (2277579-2277267) | |
| 374-494, gnl|oryCun1|scaffold_126577 (3909-4186) | |
| 374-494, gnl|panTro1|chr6 (141825495-141825808) | |
| 374-494, gnl|rheMac2|chr3 (177425536-177425848) | |
| 374-494, gnl|rn3|chr4 (66863997-66864304) | |
| 582-731, gnl|bosTau2|chr4 (57060584-57060733) | |
| 582-731, gnl|Hg17|chr7 (139108440-139108589) | |
| 582-731, gnl|Mm7|chr6 (38951962-38952111) | |
| 862-1140, gnl|bosTau2|chr4 (57067599-57067874) | |
| 862-1140, gnl|Hg17|chr7 (139114900-139115175) | |
| 862-1140, gnl|Mm7|chr6 (38958563-38958838) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cki (0.165235) | |
| spl (0.143184) | |
| nbm (0.0993246) |