Non-Coding RNA Search

Ss1.1-Pig3-SRG8009P18.5

Sequence:


               
               GTTAAATAGACCATTCCAGATGGTGATCTACCCTTCCCCCCAGTGATCACAAAAAAAAGG
AGCTATAATCACTAACTTATTCTCAAAAACAATAATGGTTACTGGTACCTTTACAATAAT
GTACAAGCCAATGTTTAAAATTTATACCACTTCAGTTTGGTTTGATCCTATAAACTTTCA
ACAGATGTCTTAAAATTTAAAAGCAGGCTGATTAGTTTGGAACCAGACTTCAAGTAGAGC
AAATAGTGACTTACTCAAAACTTTACTATAGTTAGATCTATGATATATTTTTATGTAGTC
TCTTGTATGTTGACTGTGTGCTATTCTGATTCATTAGGTAAGTTTGTTTTCTTTTCTTTT
TAGTAGTCGTGAAAGATGCCAAATTGGCAGAGGCTCACGTTTCTTCTCTTTACACCAAAC
AGCAGAGAGAGATCATCATTGCCTGAATTTAGCTTTGTGACTACAACAGCAAGATCCTGT
TCCTGTCTGGAGACGACTGTTATAATAATATCATCCTATTATTTAATGTTTGCCCCTTAT
CAATTTGAATAGATGTTTACATGTACTATAATTAGCATGCATATAAAGCAGTTCTTATAG
CCTAGGCTTAAATCCAGAAGTAAACTAAAATTAAAATGTTTTATACCATATTGTTTTGAA
TGAATCAGAAGACAAGCATGTTTTAATCAGGTCCTGAAGTACGGGAATTAAATATATTAG
CAACATTTAGTAGGTCCATGATTATATTTTATTATCATTAATATGATTTAATTATTACTT
ATTTAGTATTAAATTGCTTCAGATTTTTAAAACGAATGCATATGTTTATAAATACTAGTA
CTTTACATGTCCTTTCATGTGTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTAAATAGACCATTCCAGATGGTGATCTACCCTTCCCCCCAGTGATCACAAAAAAAAGG
AGCTATAATCACTAACTTATTCTCAAAAACAATAATGGTTACTGGTACCTTTACAATAAT
GTACAAGCCAATGTTTAAAATTTATACCACTTCAGTTTGGTTTGATCCTATAAACTTTCA
ACAGATGTCTTAAAATTTAAAAGCAGGCTGATTAGTTTGGAACCAGACTTCAAGTAGAGC
AAATAGTGACTTACTCAAAACTTTACTATAGTTAGATCTATGATATATTTTTATGTAGTC
TCTTGTATGTTGACTGTGTGCTATTCTGATTCATTAGGTAAGTTTGTTTTCTTTTCTTTT
TAGTAGTCGTGAAAGATGCCAAATTGGCAGAGGCTCACGTTTCTTCTCTTTACACCAAAC
AGCAGAGAGAGATCATCATTGCCTGAATTTAGCTTTGTGACTACAACAGCAAGATCCTGT
TCCTGTCTGGAGACGACTGTTATAATAATATCATCCTATTATTTAATGTTTGCCCCTTAT
CAATTTGAATAGATGTTTACATGTACTATAATTAGCATGCATATAAAGCAGTTCTTATAG
CCTAGGCTTAAATCCAGAAGTAAACTAAAATTAAAATGTTTTATACCATATTGTTTTGAA
TGAATCAGAAGACAAGCATGTTTTAATCAGGTCCTGAAGTACGGGAATTAAATATATTAG
CAACATTTAGTAGGTCCATGATTATATTTTATTATCATTAATATGATTTAATTATTACTT
ATTTAGTATTAAATTGCTTCAGATTTTTAAAACGAATGCATATGTTTATAAATACTAGTA
CTTTACATGTCCTTTCATGTGTTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               661-778, - strand, RNAz p=0.730922

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               661-778, - strand, RNAz p=0.730922

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               3-239, gnl|bosTau2|chr12 (31159327-31159553)
               

               
               3-239, gnl|canFam2|chr22 (35536202-35536718)
               

               
               3-239, gnl|dasNov1|scaffold_67181 (4717-4192)
               

               
               3-239, gnl|echTel1|scaffold_310783 (5883-6392)
               

               
               3-239, gnl|galGal2|chr1 (149906573-149906027)
               

               
               3-239, gnl|hg17|chr13 (78791426-78791951)
               

               
               3-239, gnl|Hg17|chr13 (78792020-78791795)
               

               
               3-239, gnl|loxAfr1|scaffold_1700 (78260-77741)
               

               
               3-239, gnl|mm7|chr14 (99543550-99544056)
               

               
               3-239, gnl|Mm7|chr14 (99544117-99543905)
               

               
               3-239, gnl|monDom2|scaffold_8 (17530357-17530876)
               

               
               3-239, gnl|oryCun1|scaffold_204436 (6121-5597)
               

               
               3-239, gnl|panTro1|chr14 (61446123-61446646)
               

               
               3-239, gnl|rheMac2|chr17 (59825839-59826361)
               

               
               3-239, gnl|rn3|chr15 (89186717-89187219)
               


               
               242-863, gnl|bosTau2|chr12 (31160190-31160820)
               

               
               242-863, gnl|Hg17|chr13 (78791150-78790547)
               

               
               242-863, gnl|Mm7|chr14 (99543299-99542718)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-239, gnl|bosTau2|chr12 (31159327-31159553)
               

               
               3-239, gnl|canFam2|chr22 (35536202-35536718)
               

               
               3-239, gnl|dasNov1|scaffold_67181 (4717-4192)
               

               
               3-239, gnl|echTel1|scaffold_310783 (5883-6392)
               

               
               3-239, gnl|galGal2|chr1 (149906573-149906027)
               

               
               3-239, gnl|hg17|chr13 (78791426-78791951)
               

               
               3-239, gnl|Hg17|chr13 (78792020-78791795)
               

               
               3-239, gnl|loxAfr1|scaffold_1700 (78260-77741)
               

               
               3-239, gnl|mm7|chr14 (99543550-99544056)
               

               
               3-239, gnl|Mm7|chr14 (99544117-99543905)
               

               
               3-239, gnl|monDom2|scaffold_8 (17530357-17530876)
               

               
               3-239, gnl|oryCun1|scaffold_204436 (6121-5597)
               

               
               3-239, gnl|panTro1|chr14 (61446123-61446646)
               

               
               3-239, gnl|rheMac2|chr17 (59825839-59826361)
               

               
               3-239, gnl|rn3|chr15 (89186717-89187219)
               


               
               242-863, gnl|bosTau2|chr12 (31160190-31160820)
               

               
               242-863, gnl|Hg17|chr13 (78791150-78790547)
               

               
               242-863, gnl|Mm7|chr14 (99543299-99542718)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

Help | Less info


               
               mgp (0.230681)
               

               
               sin (0.174948)
               

               
               fco (0.157208)
               

               
               tra (0.123092)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (0.230681)
               

               
               sin (0.174948)
               

               
               fco (0.157208)
               

               
               tra (0.123092)

	3-239, gnl\|bosTau2\|chr12 (31159327-31159553)
	3-239, gnl\|canFam2\|chr22 (35536202-35536718)
	3-239, gnl\|dasNov1\|scaffold_67181 (4717-4192)
	3-239, gnl\|echTel1\|scaffold_310783 (5883-6392)
	3-239, gnl\|galGal2\|chr1 (149906573-149906027)
	3-239, gnl\|hg17\|chr13 (78791426-78791951)
	3-239, gnl\|Hg17\|chr13 (78792020-78791795)
	3-239, gnl\|loxAfr1\|scaffold_1700 (78260-77741)
	3-239, gnl\|mm7\|chr14 (99543550-99544056)
	3-239, gnl\|Mm7\|chr14 (99544117-99543905)
	3-239, gnl\|monDom2\|scaffold_8 (17530357-17530876)
	3-239, gnl\|oryCun1\|scaffold_204436 (6121-5597)
	3-239, gnl\|panTro1\|chr14 (61446123-61446646)
	3-239, gnl\|rheMac2\|chr17 (59825839-59826361)
	3-239, gnl\|rn3\|chr15 (89186717-89187219)

	242-863, gnl\|bosTau2\|chr12 (31160190-31160820)
	242-863, gnl\|Hg17\|chr13 (78791150-78790547)
	242-863, gnl\|Mm7\|chr14 (99543299-99542718)