Non-Coding RNA Search

Ss1.1-Pig3-SRG8010A20.3

Sequence:


               
               CGCCATCACCGGGATTGCCCCCGATTGTCAGCGCATCCTTGTCGGATACCCACCCGAGTG
CCTGGATCTCAGCGAAGGGGATACCATTCTGGGGGACTTGCCCATCCAGTCAGGCGACAT
GCTGATCGTTGAAGAAGACCAAACCAGACCCAAAACATCACCTGCATTTACAAAACATGG
GGCTCCTAGTTACGTCAGGGAACCTTTGCCTGTGCTTACCAGAACAACGGTCCCAGCAGA
CAACTCTTGCCTCTTTACCAGTGTGTACTATGTTGTTGAAGGAGGAGTCTTGAATCCAGC
TTGTGCCCCGGAGATGAGACGCCTCATAGCACAAATCGTAGCAAGTGATCCAGACTTCTA
TAGTGAGGCAATACTGGGAAAAACAAATCAAGAGTACTGTGACTGGATCAAAAGGGATGA
TACTTGGGGTGGAGCTATTGAGATATCCATTTTGTCTAAATTTTATCAATGCGAAATATG
TGTAGTGGATACACAGACCGTAAGAATTGATCGTTTTGGGGAAGATGCAGGATACACCAA
ACGGGTCCTGCTTATATATGATGGCATCCACTATGATCCACTTCAGCGTGTATTCCATGA
CCCAGACACCCCCCTCTGACCATTTTCTCCTCTAATGATGATATTGTTCTTGTACAAGCA
CTGGAATTAGCAGATGAAGCTAGAAGCAAGAGACAATTTACTGATGTCCAACCGCTTCAC
CCTGAGATGCATGGTATGTCAGAAGGGATTAACTGGACAAGCAGAAGCAAGGGACCATGC
CAAGGAGACAGGCCATACCACCTTTGGAGAAGTGTGATCCATGCATCATGAGGATTGAAG
CCTACTACCTCACAGATCCAGAAGGCTCTGGGTTTTCCAATAAGCTATTCGTAACCCTCA
AGAGTAAAAGGACACAATGCTTGAACCATCATTTTAACCTAAAACCACTAAGACACTGAA
TTCCTTGTTAAGATTAAAATTAGTGTGCAAGTTTACAGATGTGCGTCTACAGTGGTGATC
CATGCCCTCTTTCTGCTGGGGTGN------------------------------------
------------GTTTTTGTNTTTTTTTTTTNCTCCCTGCGGCTTTTTCTGGGTGTTGTT
TTCTGCTTCTTTTGNGGGGTTTTGTTTTTGGCCTCTGCGGTGGCCTCTGTGTCTNTTTTC
CTCTTGTGTCTCCGGNTTGTGTGTCCGCGTTTTTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCCATCACCGGGATTGCCCCCGATTGTCAGCGCATCCTTGTCGGATACCCACCCGAGTG
CCTGGATCTCAGCGAAGGGGATACCATTCTGGGGGACTTGCCCATCCAGTCAGGCGACAT
GCTGATCGTTGAAGAAGACCAAACCAGACCCAAAACATCACCTGCATTTACAAAACATGG
GGCTCCTAGTTACGTCAGGGAACCTTTGCCTGTGCTTACCAGAACAACGGTCCCAGCAGA
CAACTCTTGCCTCTTTACCAGTGTGTACTATGTTGTTGAAGGAGGAGTCTTGAATCCAGC
TTGTGCCCCGGAGATGAGACGCCTCATAGCACAAATCGTAGCAAGTGATCCAGACTTCTA
TAGTGAGGCAATACTGGGAAAAACAAATCAAGAGTACTGTGACTGGATCAAAAGGGATGA
TACTTGGGGTGGAGCTATTGAGATATCCATTTTGTCTAAATTTTATCAATGCGAAATATG
TGTAGTGGATACACAGACCGTAAGAATTGATCGTTTTGGGGAAGATGCAGGATACACCAA
ACGGGTCCTGCTTATATATGATGGCATCCACTATGATCCACTTCAGCGTGTATTCCATGA
CCCAGACACCCCCCTCTGACCATTTTCTCCTCTAATGATGATATTGTTCTTGTACAAGCA
CTGGAATTAGCAGATGAAGCTAGAAGCAAGAGACAATTTACTGATGTCCAACCGCTTCAC
CCTGAGATGCATGGTATGTCAGAAGGGATTAACTGGACAAGCAGAAGCAAGGGACCATGC
CAAGGAGACAGGCCATACCACCTTTGGAGAAGTGTGATCCATGCATCATGAGGATTGAAG
CCTACTACCTCACAGATCCAGAAGGCTCTGGGTTTTCCAATAAGCTATTCGTAACCCTCA
AGAGTAAAAGGACACAATGCTTGAACCATCATTTTAACCTAAAACCACTAAGACACTGAA
TTCCTTGTTAAGATTAAAATTAGTGTGCAAGTTTACAGATGTGCGTCTACAGTGGTGATC
CATGCCCTCTTTCTGCTGGGGTGN------------------------------------
------------GTTTTTGTNTTTTTTTTTTNCTCCCTGCGGCTTTTTCTGGGTGTTGTT
TTCTGCTTCTTTTGNGGGGTTTTGTTTTTGGCCTCTGCGGTGGCCTCTGTGTCTNTTTTC
CTCTTGTGTCTCCGGNTTGTGTGTCCGCGTTTTTTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26343677|dbj|BAC35495.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26343677|dbj|BAC35495.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               470-589, - strand, RNAz p=0.771186
               

               
               669-788, + strand, RNAz p=0.764082

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               470-589, - strand, RNAz p=0.771186
               

               
               669-788, + strand, RNAz p=0.764082

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               111-1043, gnl|bosTau2|chr16 (3808610-3809541)
               

               
               111-1043, gnl|Hg17|chr1 (203611466-203610527)
               

               
               111-1043, gnl|Mm7|chr1 (130622795-130623722)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               111-1043, gnl|bosTau2|chr16 (3808610-3809541)
               

               
               111-1043, gnl|Hg17|chr1 (203611466-203610527)
               

               
               111-1043, gnl|Mm7|chr1 (130622795-130623722)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cte (0.29274)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)

	470-589, - strand, RNAz p=0.771186
	669-788, + strand, RNAz p=0.764082

	111-1043, gnl\|bosTau2\|chr16 (3808610-3809541)
	111-1043, gnl\|Hg17\|chr1 (203611466-203610527)
	111-1043, gnl\|Mm7\|chr1 (130622795-130623722)