Non-Coding RNA Search

Ss1.1-Pig3-SRG8010B04.5

Sequence:


               
               GTCAGTCGGGCCGCGCCGCGCCTCGGCTCTGGGTTGATGCCGATCACAAGCATGCTCTCT
CGGAACCTCCCGGCACCATCTGTGACGCATAATGTCGCTGGGTGAGAGCGCGGTGTTCGC
CTACGAGTCCTCGGTGCACAGCGCCCACGTGCTGCTCAGCCTGGACGAGCAGCGCCGGAA
GGACGTGCTGTGTGATGTCACGGTCCTGGTGGAGGGCCAGCCCTTCCGCGCCCACCGGGC
CGTGCTGGCGGCCTGCAGCGCCTACTTCCACGCCAGGCTCTCGGGCCAGGCCGACGCTGA
GCTGCGCATCACTCTGCCTGAGGAGGTGACAGTTAAAGGATTCGAACCTTTAATTCAGTT
TGCTTACACCGCTAAACTGATTTTAAGTAAGGACAATGTGGACGAAGTATGCAAATGTGT
GGAATTTTTAGGTGTATCTGATATTGAGGAATCCTGCTTTCAGTTTCTCAAATACAAGTT
TTTGGACTCTGCTGCAGACCAGCAAGAATGCCCAAGAAAAAAATGTTTCTCATCATCCTG
TCAGAAACCAGATTTTAAATTTTCACTTTTGGACCAGAAGGATTTAGAAATTGATCAAGT
GGAGGAATTTTTGGAACACAAAAATGTGCGGACTCCTCACTGTAAACTCCGCCGGTATCA
AGGGAGTGCACAAGTACTGCCTCCTCTGCAAGACAGTGCCAGTCAAACATGTGAATCCAT
GTGCTTAGAAAAGGATGCTGCTCTGTCTCTGCCGTCTTTATGCCCCAAATACCGGAAGTT
CCAGAAAGCGTTTGGAACTGACAGAGTCCGTGCTGTGGAGTCCAGTGTCAAAGACATTCA
CACTTCTTCTGTTCAGCCAAACGAGCCCTCCGAACGTGAGTGTTCAGGAGGTGTCCAGGA
CTGTGCAGATTTGCAGGTGATTTTAAAATGTGAAGAAAGAAAATTAGCAATGGAACATGA
AGAAGCCAAGAAGAAAGATCCTGCCTCTCAGTGCCCATCAGAAAAAACAGGAGCAACTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCAGTCGGGCCGCGCCGCGCCTCGGCTCTGGGTTGATGCCGATCACAAGCATGCTCTCT
CGGAACCTCCCGGCACCATCTGTGACGCATAATGTCGCTGGGTGAGAGCGCGGTGTTCGC
CTACGAGTCCTCGGTGCACAGCGCCCACGTGCTGCTCAGCCTGGACGAGCAGCGCCGGAA
GGACGTGCTGTGTGATGTCACGGTCCTGGTGGAGGGCCAGCCCTTCCGCGCCCACCGGGC
CGTGCTGGCGGCCTGCAGCGCCTACTTCCACGCCAGGCTCTCGGGCCAGGCCGACGCTGA
GCTGCGCATCACTCTGCCTGAGGAGGTGACAGTTAAAGGATTCGAACCTTTAATTCAGTT
TGCTTACACCGCTAAACTGATTTTAAGTAAGGACAATGTGGACGAAGTATGCAAATGTGT
GGAATTTTTAGGTGTATCTGATATTGAGGAATCCTGCTTTCAGTTTCTCAAATACAAGTT
TTTGGACTCTGCTGCAGACCAGCAAGAATGCCCAAGAAAAAAATGTTTCTCATCATCCTG
TCAGAAACCAGATTTTAAATTTTCACTTTTGGACCAGAAGGATTTAGAAATTGATCAAGT
GGAGGAATTTTTGGAACACAAAAATGTGCGGACTCCTCACTGTAAACTCCGCCGGTATCA
AGGGAGTGCACAAGTACTGCCTCCTCTGCAAGACAGTGCCAGTCAAACATGTGAATCCAT
GTGCTTAGAAAAGGATGCTGCTCTGTCTCTGCCGTCTTTATGCCCCAAATACCGGAAGTT
CCAGAAAGCGTTTGGAACTGACAGAGTCCGTGCTGTGGAGTCCAGTGTCAAAGACATTCA
CACTTCTTCTGTTCAGCCAAACGAGCCCTCCGAACGTGAGTGTTCAGGAGGTGTCCAGGA
CTGTGCAGATTTGCAGGTGATTTTAAAATGTGAAGAAAGAAAATTAGCAATGGAACATGA
AGAAGCCAAGAAGAAAGATCCTGCCTCTCAGTGCCCATCAGAAAAAACAGGAGCAACTCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|7717313|emb|CAB90435.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|7717313|emb|CAB90435.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               324-1020, gnl|bosTau2|chr1 (6152080-6151384)
               

               
               324-1020, gnl|Hg17|chr21 (29620249-29620939)
               

               
               324-1020, gnl|Mm7|chr16 (87762663-87763359)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               324-1020, gnl|bosTau2|chr1 (6152080-6151384)
               

               
               324-1020, gnl|Hg17|chr21 (29620249-29620939)
               

               
               324-1020, gnl|Mm7|chr16 (87762663-87763359)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               eep (0.122564)
               

               
               jca (0.11396)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)
               

               
               jca (0.11396)

	324-1020, gnl\|bosTau2\|chr1 (6152080-6151384)
	324-1020, gnl\|Hg17\|chr21 (29620249-29620939)
	324-1020, gnl\|Mm7\|chr16 (87762663-87763359)