Non-Coding RNA Search

Ss1.1-Pig3-SRG8010B07.5

Sequence:


               
               AATTTTCATGTCACTATCTTTGAATCCAGTTCCCACTCCAGTGGCTGGAGAGTGACCCGA
GTGCTACTTGAAGATATAGAGATTCCCTGTCCACACCTGTAAATAGCATGTCTTTCTTCC
CCTCTCAGCTTTGCTAATACCTCTCCTTGCCCTTCCCTTCAGCTTTCTCCGGTTGGTGGA
GGAAGAGGATAAAATGGACATTGCTTTCCCACCTCAGTACCACCCCCAAGTCCACAGTGT
CCAAGGTTACCACACACCACACATATTCATGCACACGAAGCACACACCTAGAGTTGTGTG
TGCCTCTCTGGGGTTGAGATAGGAAGGGAAGGTCCATAACCCATGAACTGGGCCACTGAG
CACGAGACACTTTTCATTTGCGGCAGGGAGGTGAACAGGGCCCTCAGCAGTCTCCCTGAC
AGCTCCTCTGCCAAGACCCTGCAGAGCTGGAAGGTCTGTCCTCCCCGCTGCTCTCAGGAG
TGTGCAAGGGTAGAGGGAGGGGAAGGGGCCTGCTGTATTAAGGCTAAGAGGTGGAGGGCA
GGGTCCATCTCCCAGCCTTCATCAGGAAGGGAAAGGGTTTTGGGGTCAGGTGGCAGCTAT
TCCCCACCAAGAGATTCAGGGTCACAGGTTTCTCCCCACACCTCTGAACTCAGGGCCTAG
CCACCCCTAAACTTCCAAATCCCATTTTTGTGATATATGACACTACTTATTTCTTACCCT
TCATGAAGACTGCGTGAGGAATTTCCAGCCCTTTGATGCCTGTGTGACCCCGCCCCTCTC
CTACAGTTGTATAAAGGTCAAATAGTGAAGGAACTAGGGTAAGACTGCTTCAGCCAGGTT
CTGGGGTGGAGTTTTTAGGTTTTTCTCACTTTGACAAGCCCCTGAATGTTTTTATAGTAG
TTTTTTTGTATTTTTTTGTAATGACAGTATTATGGAAAAAAATAAAGTATTTTAAAAATA
CAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATTTTCATGTCACTATCTTTGAATCCAGTTCCCACTCCAGTGGCTGGAGAGTGACCCGA
GTGCTACTTGAAGATATAGAGATTCCCTGTCCACACCTGTAAATAGCATGTCTTTCTTCC
CCTCTCAGCTTTGCTAATACCTCTCCTTGCCCTTCCCTTCAGCTTTCTCCGGTTGGTGGA
GGAAGAGGATAAAATGGACATTGCTTTCCCACCTCAGTACCACCCCCAAGTCCACAGTGT
CCAAGGTTACCACACACCACACATATTCATGCACACGAAGCACACACCTAGAGTTGTGTG
TGCCTCTCTGGGGTTGAGATAGGAAGGGAAGGTCCATAACCCATGAACTGGGCCACTGAG
CACGAGACACTTTTCATTTGCGGCAGGGAGGTGAACAGGGCCCTCAGCAGTCTCCCTGAC
AGCTCCTCTGCCAAGACCCTGCAGAGCTGGAAGGTCTGTCCTCCCCGCTGCTCTCAGGAG
TGTGCAAGGGTAGAGGGAGGGGAAGGGGCCTGCTGTATTAAGGCTAAGAGGTGGAGGGCA
GGGTCCATCTCCCAGCCTTCATCAGGAAGGGAAAGGGTTTTGGGGTCAGGTGGCAGCTAT
TCCCCACCAAGAGATTCAGGGTCACAGGTTTCTCCCCACACCTCTGAACTCAGGGCCTAG
CCACCCCTAAACTTCCAAATCCCATTTTTGTGATATATGACACTACTTATTTCTTACCCT
TCATGAAGACTGCGTGAGGAATTTCCAGCCCTTTGATGCCTGTGTGACCCCGCCCCTCTC
CTACAGTTGTATAAAGGTCAAATAGTGAAGGAACTAGGGTAAGACTGCTTCAGCCAGGTT
CTGGGGTGGAGTTTTTAGGTTTTTCTCACTTTGACAAGCCCCTGAATGTTTTTATAGTAG
TTTTTTTGTATTTTTTTGTAATGACAGTATTATGGAAAAAAATAAAGTATTTTAAAAATA
CAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               158-274, - strand, RNAz p=0.998402
               

               
               458-695, + strand, RNAz p=0.990978

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               158-274, - strand, RNAz p=0.998402
               

               
               458-695, + strand, RNAz p=0.990978

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               591-729, - strand, RNAmicro p=0.999993
               

               
               593-713, + strand, RNAmicro p=0.951558

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               591-729, - strand, RNAmicro p=0.999993
               

               
               593-713, + strand, RNAmicro p=0.951558

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               481-695, 100320 MARC 1BOV Bos taurus cDNA 5', mRNA sequence (gb|AW652362.1|), 
blast E-value=0, identity=95.81% 
               

               
               470-695, 271396 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb|BF605130.1|), 
blast E-value=0, identity=95.13% 
               

               
               470-695, 271397 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb|BF605131.1|), 
blast E-value=0, identity=95.13% 
               

               
               470-695, 466385 MARC 1BOV Bos taurus cDNA 5', mRNA sequence (gb|BI774327.1|), 
blast E-value=0, identity=95.13% 
               

               
               470-695, 719742 MARC 6BOV Bos taurus cDNA 3', mRNA sequence (gb|CB459925.1|), 
blast E-value=0, identity=95.13% 
               

               
               458-695, 17000599999801 GRN_PRENEU Homo sapiens cDNA 5', mRNA sequence 
(gb|CN360436.1|), blast E-value=0, identity=93.31%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               481-695, 100320 MARC 1BOV Bos taurus cDNA 5', mRNA sequence (gb|AW652362.1|), 
blast E-value=0, identity=95.81% 
               

               
               470-695, 271396 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb|BF605130.1|), 
blast E-value=0, identity=95.13% 
               

               
               470-695, 271397 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb|BF605131.1|), 
blast E-value=0, identity=95.13% 
               

               
               470-695, 466385 MARC 1BOV Bos taurus cDNA 5', mRNA sequence (gb|BI774327.1|), 
blast E-value=0, identity=95.13% 
               

               
               470-695, 719742 MARC 6BOV Bos taurus cDNA 3', mRNA sequence (gb|CB459925.1|), 
blast E-value=0, identity=95.13% 
               

               
               458-695, 17000599999801 GRN_PRENEU Homo sapiens cDNA 5', mRNA sequence 
(gb|CN360436.1|), blast E-value=0, identity=93.31%

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_012266, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_012266, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-960, gnl|bosTau2|chr8 (27814418-27815371)
               

               
               1-960, gnl|Hg17|chr9 (34987482-34988425)
               

               
               1-960, gnl|Mm7|chr4 (42971584-42972544)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-960, gnl|bosTau2|chr8 (27814418-27815371)
               

               
               1-960, gnl|Hg17|chr9 (34987482-34988425)
               

               
               1-960, gnl|Mm7|chr4 (42971584-42972544)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               hlv (0.278513)
               

               
               mas (0.210305)
               

               
               pla (0.133672)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hlv (0.278513)
               

               
               mas (0.210305)
               

               
               pla (0.133672)

	158-274, - strand, RNAz p=0.998402
	458-695, + strand, RNAz p=0.990978

	591-729, - strand, RNAmicro p=0.999993
	593-713, + strand, RNAmicro p=0.951558

	481-695, 100320 MARC 1BOV Bos taurus cDNA 5', mRNA sequence (gb\|AW652362.1\|), blast E-value=0, identity=95.81%
	470-695, 271396 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb\|BF605130.1\|), blast E-value=0, identity=95.13%
	470-695, 271397 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb\|BF605131.1\|), blast E-value=0, identity=95.13%
	470-695, 466385 MARC 1BOV Bos taurus cDNA 5', mRNA sequence (gb\|BI774327.1\|), blast E-value=0, identity=95.13%
	470-695, 719742 MARC 6BOV Bos taurus cDNA 3', mRNA sequence (gb\|CB459925.1\|), blast E-value=0, identity=95.13%
	458-695, 17000599999801 GRN_PRENEU Homo sapiens cDNA 5', mRNA sequence (gb\|CN360436.1\|), blast E-value=0, identity=93.31%

	1-960, gnl\|bosTau2\|chr8 (27814418-27815371)
	1-960, gnl\|Hg17\|chr9 (34987482-34988425)
	1-960, gnl\|Mm7\|chr4 (42971584-42972544)