Ss1.1-Pig3-SRG8010B14.3.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTGGGGCCATGGCGGGCTGCTGCGCGGTACTGTATGCCTTCCTGTTCGAGTATGACACGC CCCGCATCGTGCTCATCCGCAGCCGTAAAGTGGGGCTCATGAACCGCATGGTGCAGCTGC TCATCCTAGCCTATGTCATCGGGTGGGTGTTTGTGTGGGAAAAGGGCTACCAGGAAACAG ACTCTGTGGTCAGTTCAGTTACGACCAAAGCCAAGGGTGTAACCATGACCAACACCTCTA AACTTGGATTCCGGATCTGGGATGTGGCCGATTATGTGATTCCAGCTCAGGAGGAAAACT CCCTCTTCATCATGACCAACTTGATCATCACCATGAACCAGACCCAGGGCCTCTGTCCTG AGATTCCAGATAAGACCACCACCTGTAAATCAGATGCCAACTGTGCTGCTGGCTCTTCAG GCACCCACAGCAACGGCGTCGCCACAGGAAGATGTGTTCCCTTCAACGAGACTCTGAAGA CCTGCGAGGTGGCAGCCTGGTGCCCGGTGGAGGATGATGCACAAGTGCCAAAGCCTGCTT TTTTAAAGGCTGCAGAAAACTTCACTCTTTTGGTTAAGAACAACATTTGGTATCCCAAAT TTAATTTCAGCAAGAGGAACATCCTTCCCAACATCACCACCGCCTACCTCAAAACATGTA CTTACGACGCTAAAACAGATCCCTTCTGCCCCATATTCCGTCTTGGCACAATAGTCGCAA ATGCGGGGCACAACTTCCAGGACATGGCCGTCGAGGGAGGAATCATGGGCATCCAGATCA AGTGGGACTGCAACCTGGACAGAGCCGCCTCCCACTGCTTGCCCAGGTACTCCTTCCGCC GCCTGGACACCCGGGACGTGGACCACAACGTGTCCCCAGGCTACAATTTCAGGTTCGCCA AGTACTACAAGGACCAGACCGGGGCTGAGTACCGCACGCTCATCAAAGCCTACGGCATTC GCTTCGACATCATCGTGTTTGGAAAGGCTGGGAAGTTTGACATCATCCCAACCATGATCA ACGTGGGCTCCGGCTTGGCGCTCTTAGGGGTGGCGACAGTGCTGTGTGACGTCATTGTCC TCTACTGCATGAAGAAAAGATACTACTATCGGGAGAAGAAATACAAATATGTGGAAGATT ACGAGCAGGGTCTTGGCGGTGAGGTGGACCAGTGAAGCCCATGCCGCACGTGGGCTCCCC AGGGCCCTCATCAAAGCACAGCGAGAAGGGAGAAAAAGCTGCCGTGTCACCCCAGAGAGA GTTCCAGATTCTGAGTCAGTCTCCAGGAGGACTGCGGGGTTGCCCAGCTGCTCCCATGTC TTGTACGCAGTTTGCACAGTAAACACTCTGCACAGCGGGTCACCTTTTGTCCGTGGGCAA TCACCTCAGCTGTTCCTTCAGTTTGGGGTCACTGGAACAAGCTCCAGGTCCAAGGCCAGT GACACTGCTGTGGCTACAGGACGTGGCAGGGGTGGGGGGGAACCTTCTCCAGGATCAGCT TTCCTCTGAGGCGCCCACCTCCAGCCCCCTGTGAGGCCTGGCAACTCAGTTCCCGCACTT TAGAAGGGACGGTGGCCGCCCGGGCGGCGTGCCCTCTGAACACCTACCCGCTGTTCCTCT TCCCCCAGCAGCCTCTTCAACCACCCGGTCACGAGGCGGAAGGAGCATTTCCCCTTCGAG AAGCTTGGCATAGTGATGATTGAGGACCAAATATTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTGGGGCCATGGCGGGCTGCTGCGCGGTACTGTATGCCTTCCTGTTCGAGTATGACACGC CCCGCATCGTGCTCATCCGCAGCCGTAAAGTGGGGCTCATGAACCGCATGGTGCAGCTGC TCATCCTAGCCTATGTCATCGGGTGGGTGTTTGTGTGGGAAAAGGGCTACCAGGAAACAG ACTCTGTGGTCAGTTCAGTTACGACCAAAGCCAAGGGTGTAACCATGACCAACACCTCTA AACTTGGATTCCGGATCTGGGATGTGGCCGATTATGTGATTCCAGCTCAGGAGGAAAACT CCCTCTTCATCATGACCAACTTGATCATCACCATGAACCAGACCCAGGGCCTCTGTCCTG AGATTCCAGATAAGACCACCACCTGTAAATCAGATGCCAACTGTGCTGCTGGCTCTTCAG GCACCCACAGCAACGGCGTCGCCACAGGAAGATGTGTTCCCTTCAACGAGACTCTGAAGA CCTGCGAGGTGGCAGCCTGGTGCCCGGTGGAGGATGATGCACAAGTGCCAAAGCCTGCTT TTTTAAAGGCTGCAGAAAACTTCACTCTTTTGGTTAAGAACAACATTTGGTATCCCAAAT TTAATTTCAGCAAGAGGAACATCCTTCCCAACATCACCACCGCCTACCTCAAAACATGTA CTTACGACGCTAAAACAGATCCCTTCTGCCCCATATTCCGTCTTGGCACAATAGTCGCAA ATGCGGGGCACAACTTCCAGGACATGGCCGTCGAGGGAGGAATCATGGGCATCCAGATCA AGTGGGACTGCAACCTGGACAGAGCCGCCTCCCACTGCTTGCCCAGGTACTCCTTCCGCC GCCTGGACACCCGGGACGTGGACCACAACGTGTCCCCAGGCTACAATTTCAGGTTCGCCA AGTACTACAAGGACCAGACCGGGGCTGAGTACCGCACGCTCATCAAAGCCTACGGCATTC GCTTCGACATCATCGTGTTTGGAAAGGCTGGGAAGTTTGACATCATCCCAACCATGATCA ACGTGGGCTCCGGCTTGGCGCTCTTAGGGGTGGCGACAGTGCTGTGTGACGTCATTGTCC TCTACTGCATGAAGAAAAGATACTACTATCGGGAGAAGAAATACAAATATGTGGAAGATT ACGAGCAGGGTCTTGGCGGTGAGGTGGACCAGTGAAGCCCATGCCGCACGTGGGCTCCCC AGGGCCCTCATCAAAGCACAGCGAGAAGGGAGAAAAAGCTGCCGTGTCACCCCAGAGAGA GTTCCAGATTCTGAGTCAGTCTCCAGGAGGACTGCGGGGTTGCCCAGCTGCTCCCATGTC TTGTACGCAGTTTGCACAGTAAACACTCTGCACAGCGGGTCACCTTTTGTCCGTGGGCAA TCACCTCAGCTGTTCCTTCAGTTTGGGGTCACTGGAACAAGCTCCAGGTCCAAGGCCAGT GACACTGCTGTGGCTACAGGACGTGGCAGGGGTGGGGGGGAACCTTCTCCAGGATCAGCT TTCCTCTGAGGCGCCCACCTCCAGCCCCCTGTGAGGCCTGGCAACTCAGTTCCCGCACTT TAGAAGGGACGGTGGCCGCCCGGGCGGCGTGCCCTCTGAACACCTACCCGCTGTTCCTCT TCCCCCAGCAGCCTCTTCAACCACCCGGTCACGAGGCGGAAGGAGCATTTCCCCTTCGAG AAGCTTGGCATAGTGATGATTGAGGACCAAATATTA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1293-1489, + strand, RNAz p=0.995979 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1293-1489, + strand, RNAz p=0.995979 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of CR609333, + |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 142-291, gnl|bosTau2|chr17 (28189483-28189632) | |
| 142-291, gnl|canFam2|chr26 (10929059-10928892) | |
| 142-291, gnl|danRer3|chr5 (27218701-27218551) | |
| 142-291, gnl|dasNov1|scaffold_26480 (3977-4144) | |
| 142-291, gnl|echTel1|scaffold_277334 (5647-5814) | |
| 142-291, gnl|fr1|chrUn (262016609-262016777) | |
| 142-291, gnl|galGal2|chr15 (5387447-5387595) | |
| 142-291, gnl|hg17|chr12 (120117628-120117795) | |
| 142-291, gnl|Hg17|chr12 (120117656-120117805) | |
| 142-291, gnl|loxAfr1|scaffold_49093 (9178-9345) | |
| 142-291, gnl|mm7|chr5 (121948604-121948759) | |
| 142-291, gnl|Mm7|chr5 (121948620-121948769) | |
| 142-291, gnl|monDom2|scaffold_97 (1388476-1388626) | |
| 142-291, gnl|oryCun1|scaffold_205489 (6481-6648) | |
| 142-291, gnl|panTro1|chr10 (123199816-123199983) | |
| 142-291, gnl|rheMac2|chr10 (64881786-64881633) | |
| 142-291, gnl|rn3|chr12 (34819335-34819180) | |
| 142-291, gnl|tetNig1|chr12 (10140740-10140614) | |
| 142-291, gnl|xenTro1|scaffold_501 (786784-786938) | |
| 754-894, gnl|bosTau2|chr17 (28197657-28197797) | |
| 754-894, gnl|canFam2|chr26 (10920674-10920527) | |
| 754-894, gnl|danRer3|chr5 (27204540-27204390) | |
| 754-894, gnl|dasNov1|scaffold_26480 (11491-11638) | |
| 754-894, gnl|echTel1|scaffold_277334 (11903-12050) | |
| 754-894, gnl|fr1|chrUn (262020204-262020356) | |
| 754-894, gnl|galGal2|chr15 (5389333-5389478) | |
| 754-894, gnl|hg17|chr12 (120129480-120129626) | |
| 754-894, gnl|Hg17|chr12 (120129484-120129624) | |
| 754-894, gnl|loxAfr1|scaffold_139883 (681-541) | |
| 754-894, gnl|mm7|chr5 (121959445-121959591) | |
| 754-894, gnl|Mm7|chr5 (121959450-121959590) | |
| 754-894, gnl|monDom2|scaffold_97 (1408958-1409100) | |
| 754-894, gnl|oryCun1|scaffold_205489 (14049-14196) | |
| 754-894, gnl|panTro1|chr10 (123211691-123211837) | |
| 754-894, gnl|rheMac2|chr11 (122301075-122301221) | |
| 754-894, gnl|rn3|chr12 (34811062-34810916) | |
| 754-894, gnl|tetNig1|chr12 (10139560-10139409) | |
| 1145-1716, gnl|bosTau2|chr17 (28202172-28202734) | |
| 1145-1716, gnl|Hg17|chr12 (120134042-120134612) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 142-291, gnl|bosTau2|chr17 (28189483-28189632) | |
| 142-291, gnl|canFam2|chr26 (10929059-10928892) | |
| 142-291, gnl|danRer3|chr5 (27218701-27218551) | |
| 142-291, gnl|dasNov1|scaffold_26480 (3977-4144) | |
| 142-291, gnl|echTel1|scaffold_277334 (5647-5814) | |
| 142-291, gnl|fr1|chrUn (262016609-262016777) | |
| 142-291, gnl|galGal2|chr15 (5387447-5387595) | |
| 142-291, gnl|hg17|chr12 (120117628-120117795) | |
| 142-291, gnl|Hg17|chr12 (120117656-120117805) | |
| 142-291, gnl|loxAfr1|scaffold_49093 (9178-9345) | |
| 142-291, gnl|mm7|chr5 (121948604-121948759) | |
| 142-291, gnl|Mm7|chr5 (121948620-121948769) | |
| 142-291, gnl|monDom2|scaffold_97 (1388476-1388626) | |
| 142-291, gnl|oryCun1|scaffold_205489 (6481-6648) | |
| 142-291, gnl|panTro1|chr10 (123199816-123199983) | |
| 142-291, gnl|rheMac2|chr10 (64881786-64881633) | |
| 142-291, gnl|rn3|chr12 (34819335-34819180) | |
| 142-291, gnl|tetNig1|chr12 (10140740-10140614) | |
| 142-291, gnl|xenTro1|scaffold_501 (786784-786938) | |
| 754-894, gnl|bosTau2|chr17 (28197657-28197797) | |
| 754-894, gnl|canFam2|chr26 (10920674-10920527) | |
| 754-894, gnl|danRer3|chr5 (27204540-27204390) | |
| 754-894, gnl|dasNov1|scaffold_26480 (11491-11638) | |
| 754-894, gnl|echTel1|scaffold_277334 (11903-12050) | |
| 754-894, gnl|fr1|chrUn (262020204-262020356) | |
| 754-894, gnl|galGal2|chr15 (5389333-5389478) | |
| 754-894, gnl|hg17|chr12 (120129480-120129626) | |
| 754-894, gnl|Hg17|chr12 (120129484-120129624) | |
| 754-894, gnl|loxAfr1|scaffold_139883 (681-541) | |
| 754-894, gnl|mm7|chr5 (121959445-121959591) | |
| 754-894, gnl|Mm7|chr5 (121959450-121959590) | |
| 754-894, gnl|monDom2|scaffold_97 (1408958-1409100) | |
| 754-894, gnl|oryCun1|scaffold_205489 (14049-14196) | |
| 754-894, gnl|panTro1|chr10 (123211691-123211837) | |
| 754-894, gnl|rheMac2|chr11 (122301075-122301221) | |
| 754-894, gnl|rn3|chr12 (34811062-34810916) | |
| 754-894, gnl|tetNig1|chr12 (10139560-10139409) | |
| 1145-1716, gnl|bosTau2|chr17 (28202172-28202734) | |
| 1145-1716, gnl|Hg17|chr12 (120134042-120134612) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| cov (0.264306) | |
| col (0.195008) | |
| pty (0.142714) | |
| pla (0.133672) | |
| ute (0.132784) | |
| cty (0.10408) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cov (0.264306) | |
| col (0.195008) | |
| pty (0.142714) | |
| pla (0.133672) | |
| ute (0.132784) | |
| cty (0.10408) |