Non-Coding RNA Search

Ss1.1-Pig3-SRG8010C17.3

Sequence:


               
               GATATGGGTGTCCTGCAGAAGAAGCTGGTGCCCTTCATCACAGAGTTAAATATGCATCTG
GCCTAGGAATTAGAGAAGCTGAAGGAAGATCCTGGGGAAGGTGGAGTAGCTACAGGCCTG
GCTGCAGGTCTGCCTGCTGCCCCATACCAACGAGGTGAGCCAGCAGATAAATGACAACAT
GTGTGAACTGCAACAGTGCCTGGTGCCCCTGCACCAACCTTCCAAGTAAAAACAATGTGC
TGCTGCTTCACTTCTGCCCTCCAGTTATGATGCTAAATGTTTCTTGTGGCCCGTCCTAAC
CGGAAGCATACGGGGAAGGGAGTACTGGGAAACGTAGCCTAGTCAAGGTGACACATTACA
AAGCTACCCTGCCGTGAATCAGCTCCCAAGGGTCTCACTACTCACCTGAGGATTACTTGA
TAACGCTACGTTGCTGAAAATGCAGAGCTGAAGACCATGGATTTCATGGTGATCCCAGCA
AGATCAGAAATTCTGTCAAGCCCAACCAGAAAAAATCTTGCTGGTCTCGGTATTTTTGTG
TCAGTCAAGTCTTGAGAACCTGGCCTATGTAGGGACTGTACTTAATACTGGGGTTCAGGA
ATGAACAAGATAAAGTCCATGCATTTTTATTAAATACATCCGTATGTATTTACAAATGGT
GAATGGATTTCCAGCTTTATCATGGAACTTAATGGTGAAAATACAGAATTCGGGAAGCTG
TTGGGAGGACCTCCCTTGTGTGAACCTTGTTGGGGCCCAATAGGCATTGGGAATAATATA
AATAGTTTTTATCTTTATGCTGTTCTATTTTAAAATTATTTTTAAATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATATGGGTGTCCTGCAGAAGAAGCTGGTGCCCTTCATCACAGAGTTAAATATGCATCTG
GCCTAGGAATTAGAGAAGCTGAAGGAAGATCCTGGGGAAGGTGGAGTAGCTACAGGCCTG
GCTGCAGGTCTGCCTGCTGCCCCATACCAACGAGGTGAGCCAGCAGATAAATGACAACAT
GTGTGAACTGCAACAGTGCCTGGTGCCCCTGCACCAACCTTCCAAGTAAAAACAATGTGC
TGCTGCTTCACTTCTGCCCTCCAGTTATGATGCTAAATGTTTCTTGTGGCCCGTCCTAAC
CGGAAGCATACGGGGAAGGGAGTACTGGGAAACGTAGCCTAGTCAAGGTGACACATTACA
AAGCTACCCTGCCGTGAATCAGCTCCCAAGGGTCTCACTACTCACCTGAGGATTACTTGA
TAACGCTACGTTGCTGAAAATGCAGAGCTGAAGACCATGGATTTCATGGTGATCCCAGCA
AGATCAGAAATTCTGTCAAGCCCAACCAGAAAAAATCTTGCTGGTCTCGGTATTTTTGTG
TCAGTCAAGTCTTGAGAACCTGGCCTATGTAGGGACTGTACTTAATACTGGGGTTCAGGA
ATGAACAAGATAAAGTCCATGCATTTTTATTAAATACATCCGTATGTATTTACAAATGGT
GAATGGATTTCCAGCTTTATCATGGAACTTAATGGTGAAAATACAGAATTCGGGAAGCTG
TTGGGAGGACCTCCCTTGTGTGAACCTTGTTGGGGCCCAATAGGCATTGGGAATAATATA
AATAGTTTTTATCTTTATGCTGTTCTATTTTAAAATTATTTTTAAATG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               44-162, + strand, RNAz p=0.973269

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               44-162, + strand, RNAz p=0.973269

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_002384, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_002384, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               5-828, gnl|bosTau2|chr24 (37187529-37188322)
               

               
               5-828, gnl|Hg17|chr18 (46050041-46049233)
               

               
               5-828, gnl|Mm7|chr18 (74674769-74675557)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-828, gnl|bosTau2|chr24 (37187529-37188322)
               

               
               5-828, gnl|Hg17|chr18 (46050041-46049233)
               

               
               5-828, gnl|Mm7|chr18 (74674769-74675557)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               tes (0.207814)
               

               
               fty (0.17584)
               

               
               cli (0.152812)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)
               

               
               fty (0.17584)
               

               
               cli (0.152812)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

	5-828, gnl\|bosTau2\|chr24 (37187529-37188322)
	5-828, gnl\|Hg17\|chr18 (46050041-46049233)
	5-828, gnl\|Mm7\|chr18 (74674769-74675557)

	tes (0.207814)
	fty (0.17584)
	cli (0.152812)
	cty (0.10408)
	ldo (0.0970026)