Ss1.1-Pig3-SRG8010C22.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGGGCCGGGGCCCTGCCTGAGGCGGGAGCTGAAGCTGCTCGAGTCCATCTTCCACCGCG GCCACGAGCGCTTCCGCATTGCCAGCGCCTGCCTAGACGAGCTGAGCTGCGAGTTCCTGC TGGCTGGGGCCGGAGGGGCCGGGGCGGGGGCCGCGCCCGGACCTCATCTCCCCCCACGGG GGTCGGTGCCTGGGGATCCTGTCCGCATCCACTGCAACATCACGGTGAGGACCCCTTCGC TGCCCCCCATCTGGTCGGTGGAGTCTGATGACCCTAACTTGGCTGCTGTCTTGGAGAGGC TGGTGGACATAAAGAAAGGGAATACTCTGCTATTGCAGCATCTGAAGAGGATCATCTCCG ACCTGTGTAAACTCTATAACCTCCCTCAGCATCCAGATGTGGAGATGCTGGATCAGCCCT TGCCAGCAGAACAGTGTACACAGGAGGACGTGTCTTCGGAAGACGAAGATGAAGAGATGC CTGAGGACACAGAAGACCTAGATCACTATGAAATGAAAGAAGAGGAGCCAGCCGAGGGCA AGAAATCTGAAGATGATGGCATCGGCAAAGAAAACTTGGCCATACTGGAGAAAATTAAAA AGAACCAGAGGCAAGATTACTTAAATGGTGCGGTGTCTGGCTCGGTGCAGGCTACTGACC GGCTGATGAAGGAGCTCAGGGATATATACCGATCACAGAGTTTCAAAGGTGGAAACTATG CAGTCGAACTTGTGAATGACAGTCTGTATGATTGGAATGTCAAACTCCTCAAAGTTGACC AGGACAGCGCTTTGCACAATGATCTCCAGATCCTCAAAGAGAAAGAAGGAGCCGACTTCA TCCTACTTAACTTTTCTTTTAAAGATAACTTTCCCTTTGACCCGCCATTTGTCAGGGTTG TGTCTCCAGTCCTCTCCGGAGGGTATGTTCTGGGTGGAGGTGCCATCTGCATGGAACTTC TCACCAAGCAGGGCTGGAGCAGTGCCTACTCAATAGAGTCAGTGATCATGCAGATCAGTG CCACACTGGTGAAGGGAAAAGCACGAGTACAGTTCGGAGCCAACAAATCTCAATACAGTC TGACAAGAGCACAGCAGTCCTACAAGTCCTTGGTGCAGATCCACGAAAAAAACGGCTGGT ACACACCCCCGAAGGAAGATGGCTAACCCTGGAGAGCGGTCCCCTTCCTCCTTCCCCAGG CACCACTGGACCAATTACCTTTGAATGCTGTATTTGGATCTCACGCTGCCTCTGTGGTTC CCTCCCTCATTTTTCCTGGACGTGATAGCTCTGCCTATTGCAGGACAATGATGGCTATTC TAAACGCTAAGGAAAAAAAAAAAAAAAACAAACAAACAAAAAAAACAGAACTGTTTCAAG TACTCAAGACTGACTTACAGACCAACCAACCACCTGGCTGGAACCCTTGCTAGCAGGCAT TCTTATAAAAGAAACTTTCGAGCCTCCTTATATTGCTGGAAACTCAGCTGTGCTCCAGAC TAGAGCCTCCTTACCTATGCTATGGATTTTTAATTTATTTTCTCTTATTTCATGTACACT GCTTTTTTTGGTTACAGTGTATGATGGATGTGTATGAAAAAAAAATGTATCTTTGGGAAA ACAATTACAGTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGGGCCGGGGCCCTGCCTGAGGCGGGAGCTGAAGCTGCTCGAGTCCATCTTCCACCGCG GCCACGAGCGCTTCCGCATTGCCAGCGCCTGCCTAGACGAGCTGAGCTGCGAGTTCCTGC TGGCTGGGGCCGGAGGGGCCGGGGCGGGGGCCGCGCCCGGACCTCATCTCCCCCCACGGG GGTCGGTGCCTGGGGATCCTGTCCGCATCCACTGCAACATCACGGTGAGGACCCCTTCGC TGCCCCCCATCTGGTCGGTGGAGTCTGATGACCCTAACTTGGCTGCTGTCTTGGAGAGGC TGGTGGACATAAAGAAAGGGAATACTCTGCTATTGCAGCATCTGAAGAGGATCATCTCCG ACCTGTGTAAACTCTATAACCTCCCTCAGCATCCAGATGTGGAGATGCTGGATCAGCCCT TGCCAGCAGAACAGTGTACACAGGAGGACGTGTCTTCGGAAGACGAAGATGAAGAGATGC CTGAGGACACAGAAGACCTAGATCACTATGAAATGAAAGAAGAGGAGCCAGCCGAGGGCA AGAAATCTGAAGATGATGGCATCGGCAAAGAAAACTTGGCCATACTGGAGAAAATTAAAA AGAACCAGAGGCAAGATTACTTAAATGGTGCGGTGTCTGGCTCGGTGCAGGCTACTGACC GGCTGATGAAGGAGCTCAGGGATATATACCGATCACAGAGTTTCAAAGGTGGAAACTATG CAGTCGAACTTGTGAATGACAGTCTGTATGATTGGAATGTCAAACTCCTCAAAGTTGACC AGGACAGCGCTTTGCACAATGATCTCCAGATCCTCAAAGAGAAAGAAGGAGCCGACTTCA TCCTACTTAACTTTTCTTTTAAAGATAACTTTCCCTTTGACCCGCCATTTGTCAGGGTTG TGTCTCCAGTCCTCTCCGGAGGGTATGTTCTGGGTGGAGGTGCCATCTGCATGGAACTTC TCACCAAGCAGGGCTGGAGCAGTGCCTACTCAATAGAGTCAGTGATCATGCAGATCAGTG CCACACTGGTGAAGGGAAAAGCACGAGTACAGTTCGGAGCCAACAAATCTCAATACAGTC TGACAAGAGCACAGCAGTCCTACAAGTCCTTGGTGCAGATCCACGAAAAAAACGGCTGGT ACACACCCCCGAAGGAAGATGGCTAACCCTGGAGAGCGGTCCCCTTCCTCCTTCCCCAGG CACCACTGGACCAATTACCTTTGAATGCTGTATTTGGATCTCACGCTGCCTCTGTGGTTC CCTCCCTCATTTTTCCTGGACGTGATAGCTCTGCCTATTGCAGGACAATGATGGCTATTC TAAACGCTAAGGAAAAAAAAAAAAAAAACAAACAAACAAAAAAAACAGAACTGTTTCAAG TACTCAAGACTGACTTACAGACCAACCAACCACCTGGCTGGAACCCTTGCTAGCAGGCAT TCTTATAAAAGAAACTTTCGAGCCTCCTTATATTGCTGGAAACTCAGCTGTGCTCCAGAC TAGAGCCTCCTTACCTATGCTATGGATTTTTAATTTATTTTCTCTTATTTCATGTACACT GCTTTTTTTGGTTACAGTGTATGATGGATGTGTATGAAAAAAAAATGTATCTTTGGGAAA ACAATTACAGTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1413-1632, - strand, RNAz p=0.959564 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1413-1632, - strand, RNAz p=0.959564 |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 1-240, gnl|bosTau2|chr3 (8617593-8617354) | |
| 1-240, gnl|danRer3|chrUn (149166310-149166155) | |
| 1-240, gnl|dasNov1|scaffold_69862 (4884-4746) | |
| 1-240, gnl|echTel1|scaffold_245521 (3708-3832) | |
| 1-240, gnl|fr1|chrUn (154603097-154602942) | |
| 1-240, gnl|Hg17|chr1 (151343999-151343760) | |
| 1-240, gnl|hg17|chr15 (73923045-73923206) | |
| 1-240, gnl|Mm7|chr3 (89900315-89900551) | |
| 1-240, gnl|mm7|chr9 (55179929-55180102) | |
| 1-240, gnl|monDom2|scaffold_41 (17273050-17273207) | |
| 1-240, gnl|oryCun1|scaffold_96174 (132-279) | |
| 1-240, gnl|panTro1|chr16 (74549509-74549670) | |
| 1-240, gnl|rheMac2|chr7 (54819044-54819205) | |
| 1-240, gnl|rn3|chr8 (58707293-58707463) | |
| 1-240, gnl|tetNig1|chr13 (12032496-12032651) | |
| 1-240, gnl|xenTro1|scaffold_62 (2477604-2477451) | |
| 329-447, gnl|bosTau2|chr3 (8614706-8614587) | |
| 329-447, gnl|Hg17|chr1 (151341082-151340963) | |
| 329-447, gnl|Mm7|chr3 (89903011-89903134) | |
| 484-627, gnl|bosTau2|chr3 (8612456-8612313) | |
| 484-627, gnl|canFam2|chr7 (45785771-45785614) | |
| 484-627, gnl|danRer3|chrUn (149154073-149154222) | |
| 484-627, gnl|dasNov1|scaffold_12937 (10434-10591) | |
| 484-627, gnl|echTel1|scaffold_294223 (8455-8607) | |
| 484-627, gnl|fr1|chrUn (93925437-93925285) | |
| 484-627, gnl|galGal2|chr10 (4313452-4313606) | |
| 484-627, gnl|hg17|chr1 (151338573-151338730) | |
| 484-627, gnl|Hg17|chr1 (151338723-151338580) | |
| 484-627, gnl|loxAfr1|scaffold_12865 (49114-48957) | |
| 484-627, gnl|mm7|chr3 (89906079-89905929) | |
| 484-627, gnl|Mm7|chr3 (89905927-89906070) | |
| 484-627, gnl|monDom2|scaffold_59 (3487806-3487655) | |
| 484-627, gnl|oryCun1|scaffold_129858 (5119-4969) | |
| 484-627, gnl|panTro1|chr1 (133327798-133327955) | |
| 484-627, gnl|rheMac2|chr1 (133099487-133099644) | |
| 484-627, gnl|rn3|chr2 (181934923-181934773) | |
| 484-627, gnl|tetNig1|chr5 (1712548-1712391) | |
| 484-627, gnl|xenTro1|scaffold_62 (2467085-2467240) | |
| 766-878, gnl|bosTau2|chr3 (8611501-8611390) | |
| 766-878, gnl|Hg17|chr1 (151337738-151337627) | |
| 766-878, gnl|Mm7|chr3 (89907181-89907293) | |
| 1134-1632, gnl|bosTau2|chr3 (8609872-8609385) | |
| 1134-1632, gnl|Hg17|chr1 (151336019-151335544) | |
| 1134-1632, gnl|Mm7|chr3 (89908756-89909232) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-240, gnl|bosTau2|chr3 (8617593-8617354) | |
| 1-240, gnl|danRer3|chrUn (149166310-149166155) | |
| 1-240, gnl|dasNov1|scaffold_69862 (4884-4746) | |
| 1-240, gnl|echTel1|scaffold_245521 (3708-3832) | |
| 1-240, gnl|fr1|chrUn (154603097-154602942) | |
| 1-240, gnl|Hg17|chr1 (151343999-151343760) | |
| 1-240, gnl|hg17|chr15 (73923045-73923206) | |
| 1-240, gnl|Mm7|chr3 (89900315-89900551) | |
| 1-240, gnl|mm7|chr9 (55179929-55180102) | |
| 1-240, gnl|monDom2|scaffold_41 (17273050-17273207) | |
| 1-240, gnl|oryCun1|scaffold_96174 (132-279) | |
| 1-240, gnl|panTro1|chr16 (74549509-74549670) | |
| 1-240, gnl|rheMac2|chr7 (54819044-54819205) | |
| 1-240, gnl|rn3|chr8 (58707293-58707463) | |
| 1-240, gnl|tetNig1|chr13 (12032496-12032651) | |
| 1-240, gnl|xenTro1|scaffold_62 (2477604-2477451) | |
| 329-447, gnl|bosTau2|chr3 (8614706-8614587) | |
| 329-447, gnl|Hg17|chr1 (151341082-151340963) | |
| 329-447, gnl|Mm7|chr3 (89903011-89903134) | |
| 484-627, gnl|bosTau2|chr3 (8612456-8612313) | |
| 484-627, gnl|canFam2|chr7 (45785771-45785614) | |
| 484-627, gnl|danRer3|chrUn (149154073-149154222) | |
| 484-627, gnl|dasNov1|scaffold_12937 (10434-10591) | |
| 484-627, gnl|echTel1|scaffold_294223 (8455-8607) | |
| 484-627, gnl|fr1|chrUn (93925437-93925285) | |
| 484-627, gnl|galGal2|chr10 (4313452-4313606) | |
| 484-627, gnl|hg17|chr1 (151338573-151338730) | |
| 484-627, gnl|Hg17|chr1 (151338723-151338580) | |
| 484-627, gnl|loxAfr1|scaffold_12865 (49114-48957) | |
| 484-627, gnl|mm7|chr3 (89906079-89905929) | |
| 484-627, gnl|Mm7|chr3 (89905927-89906070) | |
| 484-627, gnl|monDom2|scaffold_59 (3487806-3487655) | |
| 484-627, gnl|oryCun1|scaffold_129858 (5119-4969) | |
| 484-627, gnl|panTro1|chr1 (133327798-133327955) | |
| 484-627, gnl|rheMac2|chr1 (133099487-133099644) | |
| 484-627, gnl|rn3|chr2 (181934923-181934773) | |
| 484-627, gnl|tetNig1|chr5 (1712548-1712391) | |
| 484-627, gnl|xenTro1|scaffold_62 (2467085-2467240) | |
| 766-878, gnl|bosTau2|chr3 (8611501-8611390) | |
| 766-878, gnl|Hg17|chr1 (151337738-151337627) | |
| 766-878, gnl|Mm7|chr3 (89907181-89907293) | |
| 1134-1632, gnl|bosTau2|chr3 (8609872-8609385) | |
| 1134-1632, gnl|Hg17|chr1 (151336019-151335544) | |
| 1134-1632, gnl|Mm7|chr3 (89908756-89909232) |
| Expressed library(ies): 40 entry(ies) | More info |
| Expressed library(ies): 40 entry(ies) | Help | Less info |
| clu (0.717875) | |
| rec (0.692281) | |
| sto (0.539471) | |
| lnt (0.426925) | |
| cty (0.41632) | |
| tes (0.415628) | |
| sag (0.36543) | |
| nje (0.33184) | |
| tbr (0.308356) | |
| cag (0.302389) | |
| ski (0.29347) | |
| cte (0.29274) | |
| ste (0.270416) | |
| lyg (0.266205) | |
| kid (0.259471) | |
| ece (0.229305) | |
| nms (0.213858) | |
| col (0.195008) | |
| cmu (0.186393) | |
| gul (0.177588) | |
| fty (0.17584) | |
| ill (0.175593) | |
| ton (0.1755) | |
| mcp (0.170648) | |
| cki (0.165235) | |
| fco (0.157208) | |
| eli (0.151814) | |
| isp (0.150376) | |
| lin (0.145603) | |
| cst (0.140036) | |
| nca (0.136874) | |
| che (0.136314) | |
| ssp (0.13552) | |
| ese (0.126502) | |
| bla (0.124347) | |
| cly (0.120642) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| nbm (0.0993246) | |
| ldo (0.0970026) |
| Expressed library(ies): 40 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| clu (0.717875) | |
| rec (0.692281) | |
| sto (0.539471) | |
| lnt (0.426925) | |
| cty (0.41632) | |
| tes (0.415628) | |
| sag (0.36543) | |
| nje (0.33184) | |
| tbr (0.308356) | |
| cag (0.302389) | |
| ski (0.29347) | |
| cte (0.29274) | |
| ste (0.270416) | |
| lyg (0.266205) | |
| kid (0.259471) | |
| ece (0.229305) | |
| nms (0.213858) | |
| col (0.195008) | |
| cmu (0.186393) | |
| gul (0.177588) | |
| fty (0.17584) | |
| ill (0.175593) | |
| ton (0.1755) | |
| mcp (0.170648) | |
| cki (0.165235) | |
| fco (0.157208) | |
| eli (0.151814) | |
| isp (0.150376) | |
| lin (0.145603) | |
| cst (0.140036) | |
| nca (0.136874) | |
| che (0.136314) | |
| ssp (0.13552) | |
| ese (0.126502) | |
| bla (0.124347) | |
| cly (0.120642) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| nbm (0.0993246) | |
| ldo (0.0970026) |