Non-Coding RNA Search

Ss1.1-Pig3-SRG8010D03.5

Sequence:


               
               TGGCACTTTCTGTTATCCAAATGTGTCTCAGTCTCCTTATTTAAGGACTGTGGGTGAAAA
GCTCCTGCCTGGAATTGAGGTGCTTGGGACAGGTCCCAAAGTTGTTTCTAAAGAAATTCC
AGTAGAGTCCATTGAAGAAGTTTCCAAGATTATTAAGAGAGCACCAGTAATCTGGGATAA
CATTCATGCTAACGATTATGATCAGAAGAGACTATTTCTGGGTCCTTACAAAGGAAGATC
CACAGAACTCATCCCTCGGTTAAAAGGAGTCCTAACTAATCCAAATTGTGAATTTGAAGC
CAACTATGTTGCTATCCATACCCTTGCCACGTGGTACAAATCAAACATGAATGGAGTGAG
GAAAGATGTAGTGATGAGTAAGTAGATGATTTAATTCTTGACTTTGGGAGGAGAGTTTGG
GGTTAACTAGAACCATTAGCAAGTATATATTCCTTTGTCATCAAGATTTAAGAGGATTTT
TTTTAAGGTGGTATTTAGTACCATGAATGAGATGTTTATGATAGATGAAGGGCTGAGTGG
CTTCAGACAAGTTACATAATAACTTCTTGGCCTCACTTCTTTATTTTTAAAATATCGACT
TAGACTTTTAAGGGAACTCCAGGGAATATTTTCTTTATGAAAAGTAGTATAGTGCCTTCA
GGGAGTTCCCATTGTGGCTCAGCGGGTTAAGAACCCTACTAGTATCCATGAGGATATGGG
TTTGATCCTTGGCCTCACTCAGTGAGTTAAGGATCCAGTGGTGCCTCAAGCCACAGCGCA
GGTTGCAGATGTGCCTTGGATCTGGTATTGCTGTGGCTGTGGTGTAAGCCAGCACCTGCA
GTTCCAGTTTGACCCCTAGCCTGGGAACTTTCATAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGCACTTTCTGTTATCCAAATGTGTCTCAGTCTCCTTATTTAAGGACTGTGGGTGAAAA
GCTCCTGCCTGGAATTGAGGTGCTTGGGACAGGTCCCAAAGTTGTTTCTAAAGAAATTCC
AGTAGAGTCCATTGAAGAAGTTTCCAAGATTATTAAGAGAGCACCAGTAATCTGGGATAA
CATTCATGCTAACGATTATGATCAGAAGAGACTATTTCTGGGTCCTTACAAAGGAAGATC
CACAGAACTCATCCCTCGGTTAAAAGGAGTCCTAACTAATCCAAATTGTGAATTTGAAGC
CAACTATGTTGCTATCCATACCCTTGCCACGTGGTACAAATCAAACATGAATGGAGTGAG
GAAAGATGTAGTGATGAGTAAGTAGATGATTTAATTCTTGACTTTGGGAGGAGAGTTTGG
GGTTAACTAGAACCATTAGCAAGTATATATTCCTTTGTCATCAAGATTTAAGAGGATTTT
TTTTAAGGTGGTATTTAGTACCATGAATGAGATGTTTATGATAGATGAAGGGCTGAGTGG
CTTCAGACAAGTTACATAATAACTTCTTGGCCTCACTTCTTTATTTTTAAAATATCGACT
TAGACTTTTAAGGGAACTCCAGGGAATATTTTCTTTATGAAAAGTAGTATAGTGCCTTCA
GGGAGTTCCCATTGTGGCTCAGCGGGTTAAGAACCCTACTAGTATCCATGAGGATATGGG
TTTGATCCTTGGCCTCACTCAGTGAGTTAAGGATCCAGTGGTGCCTCAAGCCACAGCGCA
GGTTGCAGATGTGCCTTGGATCTGGTATTGCTGTGGCTGTGGTGTAAGCCAGCACCTGCA
GTTCCAGTTTGACCCCTAGCCTGGGAACTTTCATAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|47198331|emb|CAF89009.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47198331|emb|CAF89009.1|

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               91-611, gnl|bosTau2|chr26 (16665605-16665092)
               

               
               91-611, gnl|Hg17|chr10 (103553768-103553077)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               91-611, gnl|bosTau2|chr26 (16665605-16665092)
               

               
               91-611, gnl|Hg17|chr10 (103553768-103553077)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               tes (0.207814)
               

               
               rec (0.17307)
               

               
               nmm (0.132802)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)
               

               
               rec (0.17307)
               

               
               nmm (0.132802)

	91-611, gnl\|bosTau2\|chr26 (16665605-16665092)
	91-611, gnl\|Hg17\|chr10 (103553768-103553077)