Ss1.1-Pig3-SRG8010D14.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGCTGATCGAGGAGCGGCTGGCGCAGGAGGAGGAAAATGAGAAACTCCGAGGAGCCACCC ATCAGAAGTTGCCCATGGAGATGCTGAAGTTGGAGGATGAGAAGCACCACAGGCCTCAGA GTCCAGACTTGCAAAAGGTTAAGGGCCAGGAGCGTGTGCGTAAGACGTCCCTGGACCTGC GGAGGGAGATCATCGACGTGGGCGGGATCCAGAACCTCATCCAGCTGCGGAAAAAACGCA AGCAGAAGAAGCGGGAGGCCTTGGCCGCCTCCCAGGAGCCGCCTCCTGAGCCGGAGGAGA TCACCGGCCCTGTGGACGAGGAGACATTCCTGAAAGCGGCGGTGGAGGGGAAAATGAAGG TCATTGAGAAGTTCCTGGCGGATGGGGGTTCCCCAGACACCTGCGACCAGTTCCGCCGGA CAGCCCTGCACCGGGCTTCCCTGGAGGGCCACATGGAGATCCTGGAGAAGCTTCTGGAGA GTGGGGCTACTGTGGACTTCCAGGATCGGCTGGACTGCACAGCCATGCATTGGGCCTGCC GTGGGGGCCACTTGGAGGTGGTGAAACTCCTGCAAAGCCGAGGAGCAGACACCAGTGTGA GAGATAAGCTGCTGAGCACCCCACTGCACGTGGCGGTCCGGACGGGGCACGTGGAGATCG TGGAACATTTTCTGTCCCTGGGCCTGGACATCAATGCCAAAGACAGAGAAGGGGACAGCG CCCTGCACGACGCCGTGAGACTCAACCGCTACAAAATCATCAAACTGCTGCTCCTACACG GGGCTGACATGATGACCAAGAACCTGGCAGGAAAGACCCCCACGGACCTGGTGCAGTTGT GGCAAGCTGACACCCGGCACGCTCTGGAGCACCCCGAGCCGGAGTCGGAGCAGAACGGGC TGGAGGGGTCTGGGAGTGGGCGGGCAACCCCTCAGCCTGTGCCAGCACAGTAAATGCCTG TTGCAGCCCAGGCTGGCACCTGACCTGTCCCCTGCATACAGCTGGAGGGTCACAAGAATG GCCCTCAGGCTGAGGACTGCTTGGCTCCTCTGTGTTCACCCCAGGAACACCCACAAGCTA CCGCAATAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGCTGATCGAGGAGCGGCTGGCGCAGGAGGAGGAAAATGAGAAACTCCGAGGAGCCACCC ATCAGAAGTTGCCCATGGAGATGCTGAAGTTGGAGGATGAGAAGCACCACAGGCCTCAGA GTCCAGACTTGCAAAAGGTTAAGGGCCAGGAGCGTGTGCGTAAGACGTCCCTGGACCTGC GGAGGGAGATCATCGACGTGGGCGGGATCCAGAACCTCATCCAGCTGCGGAAAAAACGCA AGCAGAAGAAGCGGGAGGCCTTGGCCGCCTCCCAGGAGCCGCCTCCTGAGCCGGAGGAGA TCACCGGCCCTGTGGACGAGGAGACATTCCTGAAAGCGGCGGTGGAGGGGAAAATGAAGG TCATTGAGAAGTTCCTGGCGGATGGGGGTTCCCCAGACACCTGCGACCAGTTCCGCCGGA CAGCCCTGCACCGGGCTTCCCTGGAGGGCCACATGGAGATCCTGGAGAAGCTTCTGGAGA GTGGGGCTACTGTGGACTTCCAGGATCGGCTGGACTGCACAGCCATGCATTGGGCCTGCC GTGGGGGCCACTTGGAGGTGGTGAAACTCCTGCAAAGCCGAGGAGCAGACACCAGTGTGA GAGATAAGCTGCTGAGCACCCCACTGCACGTGGCGGTCCGGACGGGGCACGTGGAGATCG TGGAACATTTTCTGTCCCTGGGCCTGGACATCAATGCCAAAGACAGAGAAGGGGACAGCG CCCTGCACGACGCCGTGAGACTCAACCGCTACAAAATCATCAAACTGCTGCTCCTACACG GGGCTGACATGATGACCAAGAACCTGGCAGGAAAGACCCCCACGGACCTGGTGCAGTTGT GGCAAGCTGACACCCGGCACGCTCTGGAGCACCCCGAGCCGGAGTCGGAGCAGAACGGGC TGGAGGGGTCTGGGAGTGGGCGGGCAACCCCTCAGCCTGTGCCAGCACAGTAAATGCCTG TTGCAGCCCAGGCTGGCACCTGACCTGTCCCCTGCATACAGCTGGAGGGTCACAAGAATG GCCCTCAGGCTGAGGACTGCTTGGCTCCTCTGTGTTCACCCCAGGAACACCCACAAGCTA CCGCAATAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 842-1092, + strand, RNAz p=0.999616 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 842-1092, + strand, RNAz p=0.999616 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of BC020817, + |
| Aligned organism(s): 45 entry(ies) | More info |
| Aligned organism(s): 45 entry(ies) | Help | Less info |
| 142-301, gnl|bosTau2|chr26 (10526504-10526345) | |
| 142-301, gnl|canFam2|chr28 (13840705-13840878) | |
| 142-301, gnl|echTel1|scaffold_276433 (53267-53092) | |
| 142-301, gnl|galGal2|chr6 (21449547-21449366) | |
| 142-301, gnl|hg17|chr10 (99327980-99328153) | |
| 142-301, gnl|Hg17|chr10 (99327985-99328144) | |
| 142-301, gnl|loxAfr1|scaffold_31380 (7737-7910) | |
| 142-301, gnl|mm7|chr19 (41933916-41934089) | |
| 142-301, gnl|Mm7|chr19 (41933921-41934080) | |
| 142-301, gnl|monDom2|scaffold_14 (24879458-24879288) | |
| 142-301, gnl|panTro1|chr8 (101063203-101063376) | |
| 142-301, gnl|rheMac2|chr9 (97158750-97158923) | |
| 142-301, gnl|rn3|chr1 (249070931-249070758) | |
| 303-410, gnl|bosTau2|chr26 (10526234-10526127) | |
| 303-410, gnl|canFam2|chr28 (13840965-13841120) | |
| 303-410, gnl|echTel1|scaffold_276433 (53034-52879) | |
| 303-410, gnl|galGal2|chr6 (21449288-21449124) | |
| 303-410, gnl|hg17|chr10 (99328221-99328375) | |
| 303-410, gnl|Hg17|chr10 (99328245-99328352) | |
| 303-410, gnl|loxAfr1|scaffold_31380 (8224-8355) | |
| 303-410, gnl|mm7|chr19 (41934150-41934294) | |
| 303-410, gnl|Mm7|chr19 (41934175-41934282) | |
| 303-410, gnl|monDom2|scaffold_14 (24878709-24878555) | |
| 303-410, gnl|oryCun1|scaffold_86101 (4353-4209) | |
| 303-410, gnl|panTro1|chr8 (101063444-101063598) | |
| 303-410, gnl|rheMac2|chr9 (97158991-97159145) | |
| 303-410, gnl|rn3|chr1 (249070696-249070545) | |
| 607-708, gnl|bosTau2|chr26 (10524271-10524170) | |
| 607-708, gnl|canFam2|chr28 (13844319-13844488) | |
| 607-708, gnl|dasNov1|scaffold_13427 (9948-9780) | |
| 607-708, gnl|echTel1|scaffold_276433 (49113-48943) | |
| 607-708, gnl|galGal2|chrUn (64565928-64566056) | |
| 607-708, gnl|hg17|chr10 (99332046-99332211) | |
| 607-708, gnl|Hg17|chr10 (99332060-99332161) | |
| 607-708, gnl|loxAfr1|scaffold_31380 (11730-11898) | |
| 607-708, gnl|mm7|chr19 (41937576-41937742) | |
| 607-708, gnl|Mm7|chr19 (41937590-41937691) | |
| 607-708, gnl|monDom2|scaffold_14 (24875213-24875043) | |
| 607-708, gnl|oryCun1|scaffold_204804 (61654-61797) | |
| 607-708, gnl|panTro1|chr8 (101067268-101067433) | |
| 607-708, gnl|rheMac2|chr9 (97163152-97163318) | |
| 607-708, gnl|rn3|chr1 (249067116-249066950) | |
| 607-708, gnl|tetNig1|chrUn_random (126353105-126352937) | |
| 803-1092, gnl|bosTau2|chr26 (10522927-10522638) | |
| 803-1092, gnl|Hg17|chr10 (99333319-99333611) |
| Aligned organism(s): 45 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 142-301, gnl|bosTau2|chr26 (10526504-10526345) | |
| 142-301, gnl|canFam2|chr28 (13840705-13840878) | |
| 142-301, gnl|echTel1|scaffold_276433 (53267-53092) | |
| 142-301, gnl|galGal2|chr6 (21449547-21449366) | |
| 142-301, gnl|hg17|chr10 (99327980-99328153) | |
| 142-301, gnl|Hg17|chr10 (99327985-99328144) | |
| 142-301, gnl|loxAfr1|scaffold_31380 (7737-7910) | |
| 142-301, gnl|mm7|chr19 (41933916-41934089) | |
| 142-301, gnl|Mm7|chr19 (41933921-41934080) | |
| 142-301, gnl|monDom2|scaffold_14 (24879458-24879288) | |
| 142-301, gnl|panTro1|chr8 (101063203-101063376) | |
| 142-301, gnl|rheMac2|chr9 (97158750-97158923) | |
| 142-301, gnl|rn3|chr1 (249070931-249070758) | |
| 303-410, gnl|bosTau2|chr26 (10526234-10526127) | |
| 303-410, gnl|canFam2|chr28 (13840965-13841120) | |
| 303-410, gnl|echTel1|scaffold_276433 (53034-52879) | |
| 303-410, gnl|galGal2|chr6 (21449288-21449124) | |
| 303-410, gnl|hg17|chr10 (99328221-99328375) | |
| 303-410, gnl|Hg17|chr10 (99328245-99328352) | |
| 303-410, gnl|loxAfr1|scaffold_31380 (8224-8355) | |
| 303-410, gnl|mm7|chr19 (41934150-41934294) | |
| 303-410, gnl|Mm7|chr19 (41934175-41934282) | |
| 303-410, gnl|monDom2|scaffold_14 (24878709-24878555) | |
| 303-410, gnl|oryCun1|scaffold_86101 (4353-4209) | |
| 303-410, gnl|panTro1|chr8 (101063444-101063598) | |
| 303-410, gnl|rheMac2|chr9 (97158991-97159145) | |
| 303-410, gnl|rn3|chr1 (249070696-249070545) | |
| 607-708, gnl|bosTau2|chr26 (10524271-10524170) | |
| 607-708, gnl|canFam2|chr28 (13844319-13844488) | |
| 607-708, gnl|dasNov1|scaffold_13427 (9948-9780) | |
| 607-708, gnl|echTel1|scaffold_276433 (49113-48943) | |
| 607-708, gnl|galGal2|chrUn (64565928-64566056) | |
| 607-708, gnl|hg17|chr10 (99332046-99332211) | |
| 607-708, gnl|Hg17|chr10 (99332060-99332161) | |
| 607-708, gnl|loxAfr1|scaffold_31380 (11730-11898) | |
| 607-708, gnl|mm7|chr19 (41937576-41937742) | |
| 607-708, gnl|Mm7|chr19 (41937590-41937691) | |
| 607-708, gnl|monDom2|scaffold_14 (24875213-24875043) | |
| 607-708, gnl|oryCun1|scaffold_204804 (61654-61797) | |
| 607-708, gnl|panTro1|chr8 (101067268-101067433) | |
| 607-708, gnl|rheMac2|chr9 (97163152-97163318) | |
| 607-708, gnl|rn3|chr1 (249067116-249066950) | |
| 607-708, gnl|tetNig1|chrUn_random (126353105-126352937) | |
| 803-1092, gnl|bosTau2|chr26 (10522927-10522638) | |
| 803-1092, gnl|Hg17|chr10 (99333319-99333611) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mas (0.84122) | |
| ssp (0.542079) |