Non-Coding RNA Search

Ss1.1-Pig3-SRG8010E02.5

Sequence:


               
               CAATACCAGACAAGCCCTGAGCTTTGCTAGCTGTGGGGGCCTTATTTTGGTAAGGTATCA
GAAAAGTCCGTGATACATTTGAATAAAGCAAATTAGGAGAAAGCTCAGGCCAGAGTAAAA
AAAAGTAATAGCTGCTGACTAGTACTCACAGCAGATAAAGTACTAGTCTAAGAGATAAAG
GCACCATTTCTGCTACAGGATTTCAGGGATTTCTCTTTTGGGGGTTCTTTTCTGGGTAGC
TCAGGCATTTATTTGATCATATCGGCACATGACGAGGCCAGGAGCACATGGCTTTAAAAT
GACCTGGTGTTCAAATAGCAGCTTAATGATGTGTATAGTGTGCACACCGCTTGCTTTTGT
GTTTATGTTTTCTGCTGTATTGCATGTCACATGGTTTTAAACTGGAAGCACAATTCCATT
GTTTGGGAGTAAAAAAACACATTCTCTTCCTGATGCACGGCCCACCTTAGTTGCTGAACA
AATCACAGAGCATTCACACTGTGTGATATTTGTGTTATCATGACCCAAGCTCTTCGAGAA
CATTCCGCACTGGAAATATTTTGGTACCAAAAGTACCGTGAAAGTTGTAGGCATCTCTGC
CAGACTCCCAGGTCCTTGAGAGAAGGGCGGGTGTGAGCCGTGCCTTGGTTTTTCAGCAGT
GCCTTGCACAAGACAAGCGCACCAGAGGATTTGTTAAGTAAATAAATGAAGGGTGTCCCG
GGTGAGTGAGAGAGGAATACATTAGGGAGGTGAGGGGAGAGAGAGTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAATACCAGACAAGCCCTGAGCTTTGCTAGCTGTGGGGGCCTTATTTTGGTAAGGTATCA
GAAAAGTCCGTGATACATTTGAATAAAGCAAATTAGGAGAAAGCTCAGGCCAGAGTAAAA
AAAAGTAATAGCTGCTGACTAGTACTCACAGCAGATAAAGTACTAGTCTAAGAGATAAAG
GCACCATTTCTGCTACAGGATTTCAGGGATTTCTCTTTTGGGGGTTCTTTTCTGGGTAGC
TCAGGCATTTATTTGATCATATCGGCACATGACGAGGCCAGGAGCACATGGCTTTAAAAT
GACCTGGTGTTCAAATAGCAGCTTAATGATGTGTATAGTGTGCACACCGCTTGCTTTTGT
GTTTATGTTTTCTGCTGTATTGCATGTCACATGGTTTTAAACTGGAAGCACAATTCCATT
GTTTGGGAGTAAAAAAACACATTCTCTTCCTGATGCACGGCCCACCTTAGTTGCTGAACA
AATCACAGAGCATTCACACTGTGTGATATTTGTGTTATCATGACCCAAGCTCTTCGAGAA
CATTCCGCACTGGAAATATTTTGGTACCAAAAGTACCGTGAAAGTTGTAGGCATCTCTGC
CAGACTCCCAGGTCCTTGAGAGAAGGGCGGGTGTGAGCCGTGCCTTGGTTTTTCAGCAGT
GCCTTGCACAAGACAAGCGCACCAGAGGATTTGTTAAGTAAATAAATGAAGGGTGTCCCG
GGTGAGTGAGAGAGGAATACATTAGGGAGGTGAGGGGAGAGAGAGTGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               547-647, - strand, RNAz p=0.687404

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               547-647, - strand, RNAz p=0.687404

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               8-766, gnl|bosTau2|chr6 (50820278-50819461)
               

               
               8-766, gnl|Hg17|chr4 (79820374-79821151)
               

               
               8-766, gnl|Mm7|chr5 (95995855-95996625)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-766, gnl|bosTau2|chr6 (50820278-50819461)
               

               
               8-766, gnl|Hg17|chr4 (79820374-79821151)
               

               
               8-766, gnl|Mm7|chr5 (95995855-95996625)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pgl (0.118483)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.118483)

	8-766, gnl\|bosTau2\|chr6 (50820278-50819461)
	8-766, gnl\|Hg17\|chr4 (79820374-79821151)
	8-766, gnl\|Mm7\|chr5 (95995855-95996625)