Non-Coding RNA Search

Ss1.1-Pig3-SRG8010E03.3

Sequence:


               
               TGCAAGGTGCTGGCTCCCCCAGGAGGGCTAAGGCCTCAGGGGTGACCCACAGGGAGGGGC
TACCAACCTAGGCCTCCCAACCCGAGGGAAGGCTGTCCTTTCAGAGCCATCGCACCCCCT
TACCCTGCCCTAGAATAGTGGGAGGGCTCCAAGGGCCAACCCCTGGCATCAAAAAAGAAG
GCAGGTTTCAGCCTCTATCTCCTTTTCCTGCCCCGTGAGATACAGGTGATGAAGGTCCTG
CGGCACAAGTACCTCATCAACTTCTATCAGGCCATCGAGACCACGTCCCGAGTGTACATC
ATCCTGGAGCTGGCTCAGGGTGGTGACGTCCTTGAGTGGATCCAGCGCTACGGGGCCTGC
TTCTTAGGTCCAGCTGGCAAGTGGTTCTCCCAGATGACCCTGGGCATTGCCTACCTGCAC
AGCAAGGGCATCGTGCACCGAACCTGGTCCTCCAGACGCTACGCCAAGCCACCAAGCGTG
CCACCATCCTGGACATCATCAAGGATCCCTGGGTGCTCAAGTTTCAGCCTGAGCAAGCCA
CCCATGAGATCAGGCTGCTCGAGGCCATGTGCCAGCCCCCCAGCACCACTCATCGTCACC
AGTCCTTGGAAATTAGTACCTGAAAGTGGCTGAGGGAGGGAGGGGGTGGAGAGGGAGCAA
AACAGGAGGGTCTGGGGCTAAAAATCTTTTATACCAAAAATAAATCTAATTGTGTTTTAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCAAGGTGCTGGCTCCCCCAGGAGGGCTAAGGCCTCAGGGGTGACCCACAGGGAGGGGC
TACCAACCTAGGCCTCCCAACCCGAGGGAAGGCTGTCCTTTCAGAGCCATCGCACCCCCT
TACCCTGCCCTAGAATAGTGGGAGGGCTCCAAGGGCCAACCCCTGGCATCAAAAAAGAAG
GCAGGTTTCAGCCTCTATCTCCTTTTCCTGCCCCGTGAGATACAGGTGATGAAGGTCCTG
CGGCACAAGTACCTCATCAACTTCTATCAGGCCATCGAGACCACGTCCCGAGTGTACATC
ATCCTGGAGCTGGCTCAGGGTGGTGACGTCCTTGAGTGGATCCAGCGCTACGGGGCCTGC
TTCTTAGGTCCAGCTGGCAAGTGGTTCTCCCAGATGACCCTGGGCATTGCCTACCTGCAC
AGCAAGGGCATCGTGCACCGAACCTGGTCCTCCAGACGCTACGCCAAGCCACCAAGCGTG
CCACCATCCTGGACATCATCAAGGATCCCTGGGTGCTCAAGTTTCAGCCTGAGCAAGCCA
CCCATGAGATCAGGCTGCTCGAGGCCATGTGCCAGCCCCCCAGCACCACTCATCGTCACC
AGTCCTTGGAAATTAGTACCTGAAAGTGGCTGAGGGAGGGAGGGGGTGGAGAGGGAGCAA
AACAGGAGGGTCTGGGGCTAAAAATCTTTTATACCAAAAATAAATCTAATTGTGTTTTAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|50925773|gb|AAH79202.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|50925773|gb|AAH79202.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-100, - strand, RNAz p=0.756405
               

               
               440-558, - strand, RNAz p=0.914519

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-100, - strand, RNAz p=0.756405
               

               
               440-558, - strand, RNAz p=0.914519

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               1-166, gnl|bosTau2|chr10 (12284577-12284410)
               

               
               1-166, gnl|Hg17|chr14 (23746550-23746743)
               

               
               1-166, gnl|Mm7|chr14 (50519199-50519376)
               


               
               440-720, gnl|bosTau2|chr10 (12284155-12283870)
               

               
               440-720, gnl|canFam2|chr8 (7199959-7200529)
               

               
               440-720, gnl|dasNov1|scaffold_49563 (6377-5788)
               

               
               440-720, gnl|echTel1|scaffold_189359 (6399-6932)
               

               
               440-720, gnl|hg17|chr14 (23746807-23747384)
               

               
               440-720, gnl|Hg17|chr14 (23747009-23747285)
               

               
               440-720, gnl|loxAfr1|scaffold_115682 (4293-4877)
               

               
               440-720, gnl|mm7|chr14 (50519445-50519969)
               

               
               440-720, gnl|Mm7|chr14 (50519617-50519879)
               

               
               440-720, gnl|monDom2|scaffold_12 (25557741-25557125)
               

               
               440-720, gnl|oryCun1|scaffold_178102 (89673-90266)
               

               
               440-720, gnl|panTro1|chr15 (22648404-22648981)
               

               
               440-720, gnl|rheMac2|chr7 (87101770-87102347)
               

               
               440-720, gnl|rn3|chr15 (33803288-33803821)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-166, gnl|bosTau2|chr10 (12284577-12284410)
               

               
               1-166, gnl|Hg17|chr14 (23746550-23746743)
               

               
               1-166, gnl|Mm7|chr14 (50519199-50519376)
               


               
               440-720, gnl|bosTau2|chr10 (12284155-12283870)
               

               
               440-720, gnl|canFam2|chr8 (7199959-7200529)
               

               
               440-720, gnl|dasNov1|scaffold_49563 (6377-5788)
               

               
               440-720, gnl|echTel1|scaffold_189359 (6399-6932)
               

               
               440-720, gnl|hg17|chr14 (23746807-23747384)
               

               
               440-720, gnl|Hg17|chr14 (23747009-23747285)
               

               
               440-720, gnl|loxAfr1|scaffold_115682 (4293-4877)
               

               
               440-720, gnl|mm7|chr14 (50519445-50519969)
               

               
               440-720, gnl|Mm7|chr14 (50519617-50519879)
               

               
               440-720, gnl|monDom2|scaffold_12 (25557741-25557125)
               

               
               440-720, gnl|oryCun1|scaffold_178102 (89673-90266)
               

               
               440-720, gnl|panTro1|chr15 (22648404-22648981)
               

               
               440-720, gnl|rheMac2|chr7 (87101770-87102347)
               

               
               440-720, gnl|rn3|chr15 (33803288-33803821)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cte (0.29274)
               

               
               nms (0.213858)
               

               
               pgl (0.118483)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)
               

               
               nms (0.213858)
               

               
               pgl (0.118483)

	1-100, - strand, RNAz p=0.756405
	440-558, - strand, RNAz p=0.914519

	1-166, gnl\|bosTau2\|chr10 (12284577-12284410)
	1-166, gnl\|Hg17\|chr14 (23746550-23746743)
	1-166, gnl\|Mm7\|chr14 (50519199-50519376)

	440-720, gnl\|bosTau2\|chr10 (12284155-12283870)
	440-720, gnl\|canFam2\|chr8 (7199959-7200529)
	440-720, gnl\|dasNov1\|scaffold_49563 (6377-5788)
	440-720, gnl\|echTel1\|scaffold_189359 (6399-6932)
	440-720, gnl\|hg17\|chr14 (23746807-23747384)
	440-720, gnl\|Hg17\|chr14 (23747009-23747285)
	440-720, gnl\|loxAfr1\|scaffold_115682 (4293-4877)
	440-720, gnl\|mm7\|chr14 (50519445-50519969)
	440-720, gnl\|Mm7\|chr14 (50519617-50519879)
	440-720, gnl\|monDom2\|scaffold_12 (25557741-25557125)
	440-720, gnl\|oryCun1\|scaffold_178102 (89673-90266)
	440-720, gnl\|panTro1\|chr15 (22648404-22648981)
	440-720, gnl\|rheMac2\|chr7 (87101770-87102347)
	440-720, gnl\|rn3\|chr15 (33803288-33803821)