Non-Coding RNA Search

Ss1.1-Pig3-SRG8010E07.3

Sequence:


               
               GAGAAACTGGGAGTTCCTGCAGTGAAGGAAGTGGCCAACATGTGTCGTTTCTATCAAATG
AAGCCAGACCGTGATATTGAGCTCACCCGCCGACTAAACCCCAAAGTCAAAAGCTTCAGC
CAGTTTGTCTCAGAGAACCAGGCAGCCCTGAAGGTCAATTAAGCTGTTCACGCAGGCCCC
TGAGCACACAAAATCCTTTCTCCCTGATTCCAGTCCTCTTTACAGCAAGGGAACGCTTCC
TGTGTATTTCTTATTGAAGTGGTCCTCTCTCCAAAGGCTGCCATGACCTTTTCAGTTTGT
GGTTGGGTTGGGGCCACAGGGTGAGAGGGGCCATCTCACCATTTAGTTGCAAGTGAAGCT
CAGAGGCTCTGCAGTGGGTGAAGGCCAGGAGCTTAAGGCAATGACTGGCGAAAGCGAAGG
TGGTGGAAGGGCCCCCATGATATCTTTGTGTGTATCTGCTTAGCATTTTCTACCCCATAT
TGTAATTCTGTGTTCCCTGGTTTTCCTCTTGGCTGTGAGACTTCCCCTGTTTTTTATTCC
AGTGCCTGGCACGTGATAGACATCAATAAAGATAGATTGACTTGCAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGAAACTGGGAGTTCCTGCAGTGAAGGAAGTGGCCAACATGTGTCGTTTCTATCAAATG
AAGCCAGACCGTGATATTGAGCTCACCCGCCGACTAAACCCCAAAGTCAAAAGCTTCAGC
CAGTTTGTCTCAGAGAACCAGGCAGCCCTGAAGGTCAATTAAGCTGTTCACGCAGGCCCC
TGAGCACACAAAATCCTTTCTCCCTGATTCCAGTCCTCTTTACAGCAAGGGAACGCTTCC
TGTGTATTTCTTATTGAAGTGGTCCTCTCTCCAAAGGCTGCCATGACCTTTTCAGTTTGT
GGTTGGGTTGGGGCCACAGGGTGAGAGGGGCCATCTCACCATTTAGTTGCAAGTGAAGCT
CAGAGGCTCTGCAGTGGGTGAAGGCCAGGAGCTTAAGGCAATGACTGGCGAAAGCGAAGG
TGGTGGAAGGGCCCCCATGATATCTTTGTGTGTATCTGCTTAGCATTTTCTACCCCATAT
TGTAATTCTGTGTTCCCTGGTTTTCCTCTTGGCTGTGAGACTTCCCCTGTTTTTTATTCC
AGTGCCTGGCACGTGATAGACATCAATAAAGATAGATTGACTTGCAAAAAAAAAAAAAAA

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               2-227, gnl|bosTau2|chr1 (54468270-54468495)
               

               
               2-227, gnl|Hg17|chr3 (187180168-187180401)
               

               
               2-227, gnl|Mm7|chr16 (21955623-21956360)
               


               
               247-414, gnl|bosTau2|chr1 (54469169-54469343)
               

               
               247-414, gnl|Hg17|chr3 (187181004-187181169)
               

               
               247-414, gnl|Mm7|chr16 (21959958-21960131)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-227, gnl|bosTau2|chr1 (54468270-54468495)
               

               
               2-227, gnl|Hg17|chr3 (187180168-187180401)
               

               
               2-227, gnl|Mm7|chr16 (21955623-21956360)
               


               
               247-414, gnl|bosTau2|chr1 (54469169-54469343)
               

               
               247-414, gnl|Hg17|chr3 (187181004-187181169)
               

               
               247-414, gnl|Mm7|chr16 (21959958-21960131)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               duo (0.172801)
               

               
               nbm (0.0993246)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               duo (0.172801)
               

               
               nbm (0.0993246)

	2-227, gnl\|bosTau2\|chr1 (54468270-54468495)
	2-227, gnl\|Hg17\|chr3 (187180168-187180401)
	2-227, gnl\|Mm7\|chr16 (21955623-21956360)

	247-414, gnl\|bosTau2\|chr1 (54469169-54469343)
	247-414, gnl\|Hg17\|chr3 (187181004-187181169)
	247-414, gnl\|Mm7\|chr16 (21959958-21960131)