Non-Coding RNA Search

Ss1.1-Pig3-SRG8010E08.5

Sequence:


               
               CTGGCCACGTCCGCACCCGGGGGAGGGGGCCGCGGCGGCCCCGGCCGGGGGCCCGGCGCC
GTCCGCCCGAGCCGGGGAGCCCGCGGGGCTGCGGTTGCAGGAACCTTCCCTCTACACGAT
CAAGGCTGTTTTCATCCTAGATAATGATGGACACCGCCTGCTGGCCAAGTATTATGATGA
CACATTCCCCTCCATGAAGGAGCAGATGGCCTTCGAGAAAAACGTCTTCGACAAGACCAG
CCGGACCGACAGTGAGATTGCATTTTTCGGGGGCATGACCATCGTCTACAAGAGCAGCAT
TGACCTCTTCCTGTATGTGGTGGGCTCATCCTACGAGAACGAGCTGATGCTCATGTCCGT
TCTCACCTGCCTGTTTGAGTCCCTGAATCACATATTAAGGAAGAACGTGGAAAAGCGCTG
GTTGCTGGAGAACATGGATGGAGCCTTCCTGGTGCTGGACGAGATTGTGGATGGCGGCGT
GATTCTGGAGAGCGACCCCCAGCAAGTGGTCCAGAAAGTGAACTTTAGGGCAGATGACAG
CGGCTTGGCTGAACACAGTGTGGCCCAGGTTCTTCAGTCTGCCAAGGAACAAATTAAGTG
GTCCTTACTGAAATGAAGGCGTGCATTCAAGTCTCCCTGCCCCCAGCCCATTCCCACAAT
CCTGGCAAAAGCACAAAGGCCCTGGGGGACACTAGAGATCCCTCAGTATTCCCAGGCACT
CCCAGAACTGACTCCCGAGGTCTCTAGCCAGGGACAATGAGATGCAAAGGTTTGACTTCA
GCACTGAGTCACTCCTTCTCACCACCCTGGCTGCCGTTTTGGCCTGGAGACCAAATAAAC
CTTTGGCATCCTTGGCCTCAGAGCCCAAATAAACCTGCTTTTGTCCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGCCACGTCCGCACCCGGGGGAGGGGGCCGCGGCGGCCCCGGCCGGGGGCCCGGCGCC
GTCCGCCCGAGCCGGGGAGCCCGCGGGGCTGCGGTTGCAGGAACCTTCCCTCTACACGAT
CAAGGCTGTTTTCATCCTAGATAATGATGGACACCGCCTGCTGGCCAAGTATTATGATGA
CACATTCCCCTCCATGAAGGAGCAGATGGCCTTCGAGAAAAACGTCTTCGACAAGACCAG
CCGGACCGACAGTGAGATTGCATTTTTCGGGGGCATGACCATCGTCTACAAGAGCAGCAT
TGACCTCTTCCTGTATGTGGTGGGCTCATCCTACGAGAACGAGCTGATGCTCATGTCCGT
TCTCACCTGCCTGTTTGAGTCCCTGAATCACATATTAAGGAAGAACGTGGAAAAGCGCTG
GTTGCTGGAGAACATGGATGGAGCCTTCCTGGTGCTGGACGAGATTGTGGATGGCGGCGT
GATTCTGGAGAGCGACCCCCAGCAAGTGGTCCAGAAAGTGAACTTTAGGGCAGATGACAG
CGGCTTGGCTGAACACAGTGTGGCCCAGGTTCTTCAGTCTGCCAAGGAACAAATTAAGTG
GTCCTTACTGAAATGAAGGCGTGCATTCAAGTCTCCCTGCCCCCAGCCCATTCCCACAAT
CCTGGCAAAAGCACAAAGGCCCTGGGGGACACTAGAGATCCCTCAGTATTCCCAGGCACT
CCCAGAACTGACTCCCGAGGTCTCTAGCCAGGGACAATGAGATGCAAAGGTTTGACTTCA
GCACTGAGTCACTCCTTCTCACCACCCTGGCTGCCGTTTTGGCCTGGAGACCAAATAAAC
CTTTGGCATCCTTGGCCTCAGAGCCCAAATAAACCTGCTTTTGTCCCC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|12834399|dbj|BAB22895.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|12834399|dbj|BAB22895.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               642-824, - strand, RNAz p=0.9998
               

               
               730-827, - strand, RNAz p=0.925564

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               642-824, - strand, RNAz p=0.9998
               

               
               730-827, - strand, RNAz p=0.925564

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               564-888, gnl|bosTau2|chr19 (31121825-31122153)
               

               
               564-888, gnl|canFam2|chr9 (27652996-27653466)
               

               
               564-888, gnl|echTel1|scaffold_312618 (2905-3213)
               

               
               564-888, gnl|hg17|chr17 (43458339-43458788)
               

               
               564-888, gnl|Hg17|chr17 (43458845-43458538)
               

               
               564-888, gnl|loxAfr1|scaffold_26936 (11565-11117)
               

               
               564-888, gnl|mm7|chr11 (96970394-96969956)
               

               
               564-888, gnl|Mm7|chr11 (96969897-96970236)
               

               
               564-888, gnl|monDom2|scaffold_18 (46433317-46432697)
               

               
               564-888, gnl|panTro1|chr19_random (42394989-42395452)
               

               
               564-888, gnl|rheMac2|chr16 (32241815-32242262)
               

               
               564-888, gnl|rn3|chr10 (85637038-85636589)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               564-888, gnl|bosTau2|chr19 (31121825-31122153)
               

               
               564-888, gnl|canFam2|chr9 (27652996-27653466)
               

               
               564-888, gnl|echTel1|scaffold_312618 (2905-3213)
               

               
               564-888, gnl|hg17|chr17 (43458339-43458788)
               

               
               564-888, gnl|Hg17|chr17 (43458845-43458538)
               

               
               564-888, gnl|loxAfr1|scaffold_26936 (11565-11117)
               

               
               564-888, gnl|mm7|chr11 (96970394-96969956)
               

               
               564-888, gnl|Mm7|chr11 (96969897-96970236)
               

               
               564-888, gnl|monDom2|scaffold_18 (46433317-46432697)
               

               
               564-888, gnl|panTro1|chr19_random (42394989-42395452)
               

               
               564-888, gnl|rheMac2|chr16 (32241815-32242262)
               

               
               564-888, gnl|rn3|chr10 (85637038-85636589)

Expressed library(ies): 17 entry(ies)

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Expressed library(ies): 17 entry(ies)

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               nca (0.684369)
               

               
               amn (0.417711)
               

               
               elu (0.385356)
               

               
               eru (0.360144)
               

               
               nmm (0.265604)
               

               
               jca (0.22792)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nca (0.684369)
               

               
               amn (0.417711)
               

               
               elu (0.385356)
               

               
               eru (0.360144)
               

               
               nmm (0.265604)
               

               
               jca (0.22792)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)

	642-824, - strand, RNAz p=0.9998
	730-827, - strand, RNAz p=0.925564

	564-888, gnl\|bosTau2\|chr19 (31121825-31122153)
	564-888, gnl\|canFam2\|chr9 (27652996-27653466)
	564-888, gnl\|echTel1\|scaffold_312618 (2905-3213)
	564-888, gnl\|hg17\|chr17 (43458339-43458788)
	564-888, gnl\|Hg17\|chr17 (43458845-43458538)
	564-888, gnl\|loxAfr1\|scaffold_26936 (11565-11117)
	564-888, gnl\|mm7\|chr11 (96970394-96969956)
	564-888, gnl\|Mm7\|chr11 (96969897-96970236)
	564-888, gnl\|monDom2\|scaffold_18 (46433317-46432697)
	564-888, gnl\|panTro1\|chr19_random (42394989-42395452)
	564-888, gnl\|rheMac2\|chr16 (32241815-32242262)
	564-888, gnl\|rn3\|chr10 (85637038-85636589)

	nca (0.684369)
	amn (0.417711)
	elu (0.385356)
	eru (0.360144)
	nmm (0.265604)
	jca (0.22792)
	nlu (0.191681)
	nep (0.183925)
	fbs (0.175346)
	mcp (0.170648)
	pty (0.142714)
	hlv (0.139256)
	bla (0.124347)
	eep (0.122564)
	cly (0.120642)
	ecc (0.115035)
	spc (0.113366)