Non-Coding RNA Search

Ss1.1-Pig3-SRG8010F14.3

Sequence:


               
               TGGTTTTTGGTGCGTTTGGTTTTCTTCCAAGCTGACAGGTGCATGAGTTCAGAAGCATGT
ACAGTGTTGGATTTGTGGATACTTTGGGGACAGGGGCCTGAGGAAAGGGTGAGAGACGAG
CCAGGGCAAGGAAGGGGCTGCATGGCCCTCTCCAGGAGAGGGACTGGGAACCCACTGAGG
GTGGGGGCAAGGAGCCCAAAGCCTGTGTCCTGCTCTTCCCATCCGGCTGAGCCAGGAAGG
GAGCAGAGATGCCTGCCCCGAGTGCCCCCACCGCCCCTAAGACCCTGGCCGGGCCTGTCC
TGTCCAGAGGAGGTCCACACTACGAACATGGCCTGAAGGGACGGGCCCGAGAGGAACTGG
CCGAGGCTGGGTGGCCAGGGTCCTTCCCGCCTGCATGTCAGTACATGCCGACTGTCTCCT
GCCCCTTCCCTTCTCATCCCACCGCCTCAGCCGTCTCACCTAAGGTCCCTAACTCTTCCT
CGCTGATAATGAGGAAACCTGGTGTCCCAGCCAAAGGGGCCCCCTTCCTACCTCCTTGGG
GTGGGAGGTAAACGGGGCTCCTATACCAACCCCCCTCCCCCAGGAGAGAAATGGTGGTTG
AGTTTGGGGCCAGAAGTGAGCACAGGAGACGCAGCCCCTTCGTCGGGGTCAGTGTGCCAT
GATCAGGTTGGTTTGGTTTGTCTTTGTGTCTTTTTGTTTTGTTTTGTTTTTTAAACAATC
ATTAGTGAGATTTTTCTTCAGCCACTAGAGTTGGCCTTGAAGCAGAGGGCTGCAGCCCTT
GATGTTTGTAAAATAAGAAAGAATACACAGTGTGGCCGTGGTTGGGTTTTTTTCCCTCCT
TTGAAAATTTTCTTTTGTAAAAGCAAAATTAAATACCTTTTTAAAAAATCTGTGGATGAA
ATAGAAGCTGGAACTCTCCTCTCGGAACATTCAGCCTAAGAACCTCATGGGACTATGAAT
TCACCCGAAATTTTCATTTGCCATCAGGCCGAGCTTTTAAAGAAAAATTGTTCTCTAACC
AGGATTGTAACAAAAGTGTAAATACTATTTCAGAGTTGAAAGTTGATGGTGCAAATATGT
ATATAACGTACTGTATTTTTACAATGATTGTCGCATGACTCTATTCCGCCCCCTTTTGTA
CTCCAGATCTGTCTTCCAGAACCGTCACCTGCCCTTTCTCCTGTGGTCTCTTAATCCAAT
AATTGTATTACTGCCATTAAAGGATGCAGTTATTTTAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGTTTTTGGTGCGTTTGGTTTTCTTCCAAGCTGACAGGTGCATGAGTTCAGAAGCATGT
ACAGTGTTGGATTTGTGGATACTTTGGGGACAGGGGCCTGAGGAAAGGGTGAGAGACGAG
CCAGGGCAAGGAAGGGGCTGCATGGCCCTCTCCAGGAGAGGGACTGGGAACCCACTGAGG
GTGGGGGCAAGGAGCCCAAAGCCTGTGTCCTGCTCTTCCCATCCGGCTGAGCCAGGAAGG
GAGCAGAGATGCCTGCCCCGAGTGCCCCCACCGCCCCTAAGACCCTGGCCGGGCCTGTCC
TGTCCAGAGGAGGTCCACACTACGAACATGGCCTGAAGGGACGGGCCCGAGAGGAACTGG
CCGAGGCTGGGTGGCCAGGGTCCTTCCCGCCTGCATGTCAGTACATGCCGACTGTCTCCT
GCCCCTTCCCTTCTCATCCCACCGCCTCAGCCGTCTCACCTAAGGTCCCTAACTCTTCCT
CGCTGATAATGAGGAAACCTGGTGTCCCAGCCAAAGGGGCCCCCTTCCTACCTCCTTGGG
GTGGGAGGTAAACGGGGCTCCTATACCAACCCCCCTCCCCCAGGAGAGAAATGGTGGTTG
AGTTTGGGGCCAGAAGTGAGCACAGGAGACGCAGCCCCTTCGTCGGGGTCAGTGTGCCAT
GATCAGGTTGGTTTGGTTTGTCTTTGTGTCTTTTTGTTTTGTTTTGTTTTTTAAACAATC
ATTAGTGAGATTTTTCTTCAGCCACTAGAGTTGGCCTTGAAGCAGAGGGCTGCAGCCCTT
GATGTTTGTAAAATAAGAAAGAATACACAGTGTGGCCGTGGTTGGGTTTTTTTCCCTCCT
TTGAAAATTTTCTTTTGTAAAAGCAAAATTAAATACCTTTTTAAAAAATCTGTGGATGAA
ATAGAAGCTGGAACTCTCCTCTCGGAACATTCAGCCTAAGAACCTCATGGGACTATGAAT
TCACCCGAAATTTTCATTTGCCATCAGGCCGAGCTTTTAAAGAAAAATTGTTCTCTAACC
AGGATTGTAACAAAAGTGTAAATACTATTTCAGAGTTGAAAGTTGATGGTGCAAATATGT
ATATAACGTACTGTATTTTTACAATGATTGTCGCATGACTCTATTCCGCCCCCTTTTGTA
CTCCAGATCTGTCTTCCAGAACCGTCACCTGCCCTTTCTCCTGTGGTCTCTTAATCCAAT
AATTGTATTACTGCCATTAAAGGATGCAGTTATTTTAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               462-639, - strand, RNAz p=0.921335
               

               
               676-789, - strand, RNAz p=0.995875

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               462-639, - strand, RNAz p=0.921335
               

               
               676-789, - strand, RNAz p=0.995875

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               543-708, - strand, RNAmicro p=0.999484

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               543-708, - strand, RNAmicro p=0.999484

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

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               713-789, BP439386 full-length enriched swine cDNA library, adult lung Sus 
(dbj|BP439386.1|), blast E-value=2e-34, identity=100% 
               

               
               713-789, DB810472 full-length enriched swine cDNA library, adult liver Sus 
(dbj|DB810472.1|), blast E-value=2e-34, identity=100% 
               

               
               713-789, DG11-195d24 DG11-kidney Canis familiaris cDNA 3', mRNA sequence 
(gb|CO685008.1|), blast E-value=8e-21, identity=92.21% 
               

               
               714-789, 1476139 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DT893605.1|), 
blast E-value=3e-17, identity=90.79% 
               

               
               714-789, LB02916.CR_G02 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|DV919559.1|), 
blast E-value=3e-17, identity=90.79% 
               

               
               714-789, 000829BEMN004306HT BEMN Bos taurus cDNA, mRNA sequence 
(gb|DY101346.1|), blast E-value=3e-17, identity=90.79%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               713-789, BP439386 full-length enriched swine cDNA library, adult lung Sus 
(dbj|BP439386.1|), blast E-value=2e-34, identity=100% 
               

               
               713-789, DB810472 full-length enriched swine cDNA library, adult liver Sus 
(dbj|DB810472.1|), blast E-value=2e-34, identity=100% 
               

               
               713-789, DG11-195d24 DG11-kidney Canis familiaris cDNA 3', mRNA sequence 
(gb|CO685008.1|), blast E-value=8e-21, identity=92.21% 
               

               
               714-789, 1476139 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DT893605.1|), 
blast E-value=3e-17, identity=90.79% 
               

               
               714-789, LB02916.CR_G02 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|DV919559.1|), 
blast E-value=3e-17, identity=90.79% 
               

               
               714-789, 000829BEMN004306HT BEMN Bos taurus cDNA, mRNA sequence 
(gb|DY101346.1|), blast E-value=3e-17, identity=90.79%

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               5-175, gnl|bosTau2|chr18 (47075547-47075379)
               

               
               5-175, gnl|Mm7|chr7 (14198415-14198584)
               


               
               403-1250, gnl|bosTau2|chr18 (47075206-47074344)
               

               
               403-1250, gnl|Hg17|chr19 (52260145-52259285)
               

               
               403-1250, gnl|Mm7|chr7 (14198780-14199737)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-175, gnl|bosTau2|chr18 (47075547-47075379)
               

               
               5-175, gnl|Mm7|chr7 (14198415-14198584)
               


               
               403-1250, gnl|bosTau2|chr18 (47075206-47074344)
               

               
               403-1250, gnl|Hg17|chr19 (52260145-52259285)
               

               
               403-1250, gnl|Mm7|chr7 (14198780-14199737)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

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               elu (0.385356)
               

               
               thg (0.253582)
               

               
               cut (0.169924)
               

               
               cag (0.151194)
               

               
               csk (0.140746)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               thg (0.253582)
               

               
               cut (0.169924)
               

               
               cag (0.151194)
               

               
               csk (0.140746)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

	462-639, - strand, RNAz p=0.921335
	676-789, - strand, RNAz p=0.995875

	713-789, BP439386 full-length enriched swine cDNA library, adult lung Sus (dbj\|BP439386.1\|), blast E-value=2e-34, identity=100%
	713-789, DB810472 full-length enriched swine cDNA library, adult liver Sus (dbj\|DB810472.1\|), blast E-value=2e-34, identity=100%
	713-789, DG11-195d24 DG11-kidney Canis familiaris cDNA 3', mRNA sequence (gb\|CO685008.1\|), blast E-value=8e-21, identity=92.21%
	714-789, 1476139 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb\|DT893605.1\|), blast E-value=3e-17, identity=90.79%
	714-789, LB02916.CR_G02 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb\|DV919559.1\|), blast E-value=3e-17, identity=90.79%
	714-789, 000829BEMN004306HT BEMN Bos taurus cDNA, mRNA sequence (gb\|DY101346.1\|), blast E-value=3e-17, identity=90.79%

	5-175, gnl\|bosTau2\|chr18 (47075547-47075379)
	5-175, gnl\|Mm7\|chr7 (14198415-14198584)

	403-1250, gnl\|bosTau2\|chr18 (47075206-47074344)
	403-1250, gnl\|Hg17\|chr19 (52260145-52259285)
	403-1250, gnl\|Mm7\|chr7 (14198780-14199737)

	elu (0.385356)
	thg (0.253582)
	cut (0.169924)
	cag (0.151194)
	csk (0.140746)
	bla (0.124347)
	pgl (0.118483)
	jca (0.11396)
	spc (0.113366)
	cty (0.10408)