Non-Coding RNA Search

Ss1.1-Pig3-SRG8010F20.3

Sequence:


               
               AAGTTGAGCTATAGCTATACCTAGCTATCAAGCAGACTTTTTGTTATGACATATATGGCA
GGAACTCTAATTGTGCTTCAAAAATCTGCTGTGGACAGTGCCACAAAGACTCCCTGCCTG
GGCTGGGGCTGGGGCTGGGGGCACGCTCTGCCTCTGTTTCTGAGGGCCAGAGCATGGCAT
GGATTGACGGAACAATGGAGGTGTGCTCTGAGCTTCTTCACGTGTCACCACTTGGTGACT
CCAACACCTGTCTCCTCTTCCCCCATTAAAGGAGCTCCCATGACAAATGCCACGTGCTGC
TCTTGGGAACATGCACCCTTTCACCTGGAGCAAGTTAATGGAGGATTTTGGGCCTAGAGG
CTCTAACTGAGAATGTCCGTTCCTGAAGATATGTTCACTAACACCCTAAGCATCAACGTC
TACATAAGTTTCTCTTCAGAGGGTTAGATTTGGGTAGATGTACTGTTGGCTATAGGCATG
GTAAATTTAACTAGGAATTGATTCTTGTTAATTATGGTGTAAAGATTTGTATCCTGGCCT
GCTTATTCAGGTGAGAGATGTGCTATGTAAATTTGAGGTATAGCTTGAAGTCCTAGGACA
AGAGTTAAAAGTAACTTTTAGCTCATTCACAATCACTTACGCGTCAAGTGTTAATATCTG
TCATGAGTCTGCCATTTTTTAATGTGTTAAACAGCTGACAGATCATATAAAAAACTAAGA
TGCACTGGATTGTACTAGATGAGTCTGAAATTTGTGTTCAAGTGTGGTGCCTGACTTTAG
CAACACCTCATTCGTGCTGTGCAGCCAATGTCAGGAACACCAAAGCATTCCCCGCGGCTG
CCCTTTGGGCAGTGTTGATAGTGAGGCATTTTGGAAACTAAGGGAAGCCTGTAGTATTAG
AGGCCAGAGCTGATACCTGCCTTAGGAACTGTTAGAAGTTTTGTTGGTTGCGTTTTGGAC
TTTTGTAAAAATTGTTTATCTGTATAACAGAGTGCTTCTCTGTTACTTTTGGCCTATGGT
GTTAGAAATAAGATTATACCTTGCATATTTAGAAGAAGTTTCTGTCCATCTGTGCACTGT
TACAAGCTCTGAAGTGCTATTATACACGTTGCCGAGAGGAGGAAGGTGGAAGTTTATGAT
GGAGTGTGAGCATGCGTGGGAGCCTCGCAGCACTAGGATTGGCCCTGTTCTTAGAGCATC
CTCTCTCCATTCTCTACCTGTCCTGCTTCATGAGTTCCAGCTGGCCCGCTGTGAGGCCAA
GAGCTGCTTTGGAGTGCTGGCTGCAGGATTAAGCCAATTCTTATGCAACTGACTCAGTCC
TTAATGGCCATTTCTTCTCAAAGTTTTTGTGTGTGTGTGGGGGAGGGTGTGGGTGTTGGA
ATGGGGGTCAATTTGACGTTTAAAGTTTAAACTAGAAGTAAGATGACGTGGTCTGCGTGC
TCTCTGTTTAGACAGGCTTGAAGACCCATTGGACTTACATGGAGGCCAGGCCAGTGAGTG
GTAATTGATGACTTGTGTGCAGACAAGCATTTATCCAGATTGCGTTTGTTAAAAGCTCCA
AATTACATTCTTACACAAAAGAAAAAAAACATTCAGTAAACATGAGACACATTTAGGAGA
ACTTAATAAAAAGAAACCTGTCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGTTGAGCTATAGCTATACCTAGCTATCAAGCAGACTTTTTGTTATGACATATATGGCA
GGAACTCTAATTGTGCTTCAAAAATCTGCTGTGGACAGTGCCACAAAGACTCCCTGCCTG
GGCTGGGGCTGGGGCTGGGGGCACGCTCTGCCTCTGTTTCTGAGGGCCAGAGCATGGCAT
GGATTGACGGAACAATGGAGGTGTGCTCTGAGCTTCTTCACGTGTCACCACTTGGTGACT
CCAACACCTGTCTCCTCTTCCCCCATTAAAGGAGCTCCCATGACAAATGCCACGTGCTGC
TCTTGGGAACATGCACCCTTTCACCTGGAGCAAGTTAATGGAGGATTTTGGGCCTAGAGG
CTCTAACTGAGAATGTCCGTTCCTGAAGATATGTTCACTAACACCCTAAGCATCAACGTC
TACATAAGTTTCTCTTCAGAGGGTTAGATTTGGGTAGATGTACTGTTGGCTATAGGCATG
GTAAATTTAACTAGGAATTGATTCTTGTTAATTATGGTGTAAAGATTTGTATCCTGGCCT
GCTTATTCAGGTGAGAGATGTGCTATGTAAATTTGAGGTATAGCTTGAAGTCCTAGGACA
AGAGTTAAAAGTAACTTTTAGCTCATTCACAATCACTTACGCGTCAAGTGTTAATATCTG
TCATGAGTCTGCCATTTTTTAATGTGTTAAACAGCTGACAGATCATATAAAAAACTAAGA
TGCACTGGATTGTACTAGATGAGTCTGAAATTTGTGTTCAAGTGTGGTGCCTGACTTTAG
CAACACCTCATTCGTGCTGTGCAGCCAATGTCAGGAACACCAAAGCATTCCCCGCGGCTG
CCCTTTGGGCAGTGTTGATAGTGAGGCATTTTGGAAACTAAGGGAAGCCTGTAGTATTAG
AGGCCAGAGCTGATACCTGCCTTAGGAACTGTTAGAAGTTTTGTTGGTTGCGTTTTGGAC
TTTTGTAAAAATTGTTTATCTGTATAACAGAGTGCTTCTCTGTTACTTTTGGCCTATGGT
GTTAGAAATAAGATTATACCTTGCATATTTAGAAGAAGTTTCTGTCCATCTGTGCACTGT
TACAAGCTCTGAAGTGCTATTATACACGTTGCCGAGAGGAGGAAGGTGGAAGTTTATGAT
GGAGTGTGAGCATGCGTGGGAGCCTCGCAGCACTAGGATTGGCCCTGTTCTTAGAGCATC
CTCTCTCCATTCTCTACCTGTCCTGCTTCATGAGTTCCAGCTGGCCCGCTGTGAGGCCAA
GAGCTGCTTTGGAGTGCTGGCTGCAGGATTAAGCCAATTCTTATGCAACTGACTCAGTCC
TTAATGGCCATTTCTTCTCAAAGTTTTTGTGTGTGTGTGGGGGAGGGTGTGGGTGTTGGA
ATGGGGGTCAATTTGACGTTTAAAGTTTAAACTAGAAGTAAGATGACGTGGTCTGCGTGC
TCTCTGTTTAGACAGGCTTGAAGACCCATTGGACTTACATGGAGGCCAGGCCAGTGAGTG
GTAATTGATGACTTGTGTGCAGACAAGCATTTATCCAGATTGCGTTTGTTAAAAGCTCCA
AATTACATTCTTACACAAAAGAAAAAAAACATTCAGTAAACATGAGACACATTTAGGAGA
ACTTAATAAAAAGAAACCTGTCTT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               54-172, - strand, RNAz p=0.854973
               

               
               1224-1340, - strand, RNAz p=0.776509

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               54-172, - strand, RNAz p=0.854973
               

               
               1224-1340, - strand, RNAz p=0.776509

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               14-1644, gnl|bosTau2|chr7 (30329356-30327692)
               

               
               14-1644, gnl|Hg17|chr5 (132468348-132470031)
               

               
               14-1644, gnl|Mm7|chr11 (53218049-53216579)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               14-1644, gnl|bosTau2|chr7 (30329356-30327692)
               

               
               14-1644, gnl|Hg17|chr5 (132468348-132470031)
               

               
               14-1644, gnl|Mm7|chr11 (53218049-53216579)

Expressed library(ies): 21 entry(ies)

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Expressed library(ies): 21 entry(ies)

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               eye (0.341006)
               

               
               cki (0.330469)
               

               
               cte (0.29274)
               

               
               ldo (0.291008)
               

               
               ece (0.229305)
               

               
               rec (0.17307)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               ste (0.135208)
               

               
               kid (0.129735)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

Expressed library(ies): 21 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.341006)
               

               
               cki (0.330469)
               

               
               cte (0.29274)
               

               
               ldo (0.291008)
               

               
               ece (0.229305)
               

               
               rec (0.17307)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               ste (0.135208)
               

               
               kid (0.129735)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

	54-172, - strand, RNAz p=0.854973
	1224-1340, - strand, RNAz p=0.776509

	14-1644, gnl\|bosTau2\|chr7 (30329356-30327692)
	14-1644, gnl\|Hg17\|chr5 (132468348-132470031)
	14-1644, gnl\|Mm7\|chr11 (53218049-53216579)

	eye (0.341006)
	cki (0.330469)
	cte (0.29274)
	ldo (0.291008)
	ece (0.229305)
	rec (0.17307)
	cut (0.169924)
	fhi (0.169578)
	nje (0.16592)
	tbr (0.154178)
	isp (0.150376)
	hyp (0.142837)
	pty (0.142714)
	cst (0.140036)
	che (0.136314)
	ste (0.135208)
	kid (0.129735)
	ebs (0.118301)
	ecc (0.115035)
	cty (0.10408)
	nbm (0.0993246)