Non-Coding RNA Search

Ss1.1-Pig3-SRG8010G10.5

Sequence:


               
               TCTTTTAGCCGAATGCCTACAGGCACCATGACCTTTGCTTTCCTTAAAAACACAAATTGT
ACAAACACTTTATAAAAAGCTAATTCTTGATGTTAAAACATGACCCCACATAAAGCTGCT
TGTTAACCACTTGCCCCCTTAAACTGACACCCATGAGCATAACCTTTGTCACATTGTTCT
TTTTGATGTAATTTGTAGAAATGTTTTTTAGTTCGTAATGGAAAATGTATGTACCCTGAA
AATTACTTATTTTGTTTAACTTTGGTACAAAGGTGTTTGGGCATTTTCTTGGGGAGGGGG
GTTACAAAAGAAGTTTGTCTCCCACATCAAAAAACGTTCAAAGAAATTAAGTATTTATTA
TATTTTTTGCAGATGTTTCCATACAATTCACATAATCCTTTTGTAAAGAGAGATGAAGAA
ATGGATTAAAGATTTTTAATATTTGAAATGGTAAATAGAACTAATTTATTTGTAATATAT
TTCTGTTATTTATAGATGTTTCCTTGATGTTTTACTGTGCATTACCACTTTGATTTAAGC
CTTATCCTTGTGAATTTACCATTTCTTTTTTTAAAACATGTCTAGATGCATATTTTAAAT
AACCGGAATGTAAATCACTAGCATATCTGAATTCCCAATGTAATTTTTAGAAATTATTTT
GGTTTGGAAAAAAAAGATTCATTTGAAAGCCTTCAGATGGAGGGGTGGGAACATTTTTAT
GGCTTTATGAATTGGAATTTCATAGGCTTATTTACCTAGATTGTGTGTGGACAAAAAAAA
AAAATTGTAAATAAATGAATGTTTCCCATAATGTAAAAAGAAATTAATAAAATAATTAAT
GCACTGCTAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTTTTAGCCGAATGCCTACAGGCACCATGACCTTTGCTTTCCTTAAAAACACAAATTGT
ACAAACACTTTATAAAAAGCTAATTCTTGATGTTAAAACATGACCCCACATAAAGCTGCT
TGTTAACCACTTGCCCCCTTAAACTGACACCCATGAGCATAACCTTTGTCACATTGTTCT
TTTTGATGTAATTTGTAGAAATGTTTTTTAGTTCGTAATGGAAAATGTATGTACCCTGAA
AATTACTTATTTTGTTTAACTTTGGTACAAAGGTGTTTGGGCATTTTCTTGGGGAGGGGG
GTTACAAAAGAAGTTTGTCTCCCACATCAAAAAACGTTCAAAGAAATTAAGTATTTATTA
TATTTTTTGCAGATGTTTCCATACAATTCACATAATCCTTTTGTAAAGAGAGATGAAGAA
ATGGATTAAAGATTTTTAATATTTGAAATGGTAAATAGAACTAATTTATTTGTAATATAT
TTCTGTTATTTATAGATGTTTCCTTGATGTTTTACTGTGCATTACCACTTTGATTTAAGC
CTTATCCTTGTGAATTTACCATTTCTTTTTTTAAAACATGTCTAGATGCATATTTTAAAT
AACCGGAATGTAAATCACTAGCATATCTGAATTCCCAATGTAATTTTTAGAAATTATTTT
GGTTTGGAAAAAAAAGATTCATTTGAAAGCCTTCAGATGGAGGGGTGGGAACATTTTTAT
GGCTTTATGAATTGGAATTTCATAGGCTTATTTACCTAGATTGTGTGTGGACAAAAAAAA
AAAATTGTAAATAAATGAATGTTTCCCATAATGTAAAAAGAAATTAATAAAATAATTAAT
GCACTGCTAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               301-406, - strand, RNAz p=0.667941
               

               
               447-566, - strand, RNAz p=0.521924
               

               
               606-721, - strand, RNAz p=0.708286

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               301-406, - strand, RNAz p=0.667941
               

               
               447-566, - strand, RNAz p=0.521924
               

               
               606-721, - strand, RNAz p=0.708286

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-848, gnl|bosTau2|chr24 (26580808-26581659)
               

               
               1-848, gnl|Hg17|chr18 (3486873-3486030)
               

               
               1-848, gnl|Mm7|chr17 (69099751-69100648)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-848, gnl|bosTau2|chr24 (26580808-26581659)
               

               
               1-848, gnl|Hg17|chr18 (3486873-3486030)
               

               
               1-848, gnl|Mm7|chr17 (69099751-69100648)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fco (0.78604)
               

               
               fce (0.271592)
               

               
               tra (0.123092)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.78604)
               

               
               fce (0.271592)
               

               
               tra (0.123092)

	301-406, - strand, RNAz p=0.667941
	447-566, - strand, RNAz p=0.521924
	606-721, - strand, RNAz p=0.708286

	1-848, gnl\|bosTau2\|chr24 (26580808-26581659)
	1-848, gnl\|Hg17\|chr18 (3486873-3486030)
	1-848, gnl\|Mm7\|chr17 (69099751-69100648)