Non-Coding RNA Search

Ss1.1-Pig3-SRG8010I16.3

Sequence:


               
               TCATGTTAAGCCTCTGCCTGGGGAACCTACCAAGGACCAGAAGAGCTTCTTGCTGCTCCA
AGGACCTGCCCTCCTCTACTGAAATGCTAGCGCTTCAAGTTTCCTGATCGAGTGGCTGGG
GCCAGCTCTGACTTCCCTCGAAGACCTGGGATTTGAGCTCGCACAGCCAAGGGGCTAGGT
GGGCTCAAGCCTGGGAAGGGACCAGGGGTGGAAGATAGAAGCTGGCATCAGTAGAACGTT
TCTGGAATCTGCTAAAGAGGGGACCAAGGCGAACATCTCCTTCAAGGCCTTCTTCTCACC
CCTCCCCTCTTCCAGACATAGATTCACCCTGAGTTTCTTAACCTTCCTGTGCGGGGTCCC
CAGAGGCTGAGAGCAGGGTGGACGAGCCCTAAGAAAGTGGGGTTCCAGGGCTACCCTTGG
TTTTGACTGGGCAGCTTCCTCTCAGCTCCTTCTGGGGGGCCTCTCACAACCTGGGGAAGT
TCACTTCCCATTCCTGGAGGCAGAAGTGACCAAGCCTGAAAATGGCAGGAATGGCCATAC
AGCCAAGAAAAGCCCACCCACCCCCAGCCCAGGATCTTATGGGGGGAAATGGCGCTGGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCATGTTAAGCCTCTGCCTGGGGAACCTACCAAGGACCAGAAGAGCTTCTTGCTGCTCCA
AGGACCTGCCCTCCTCTACTGAAATGCTAGCGCTTCAAGTTTCCTGATCGAGTGGCTGGG
GCCAGCTCTGACTTCCCTCGAAGACCTGGGATTTGAGCTCGCACAGCCAAGGGGCTAGGT
GGGCTCAAGCCTGGGAAGGGACCAGGGGTGGAAGATAGAAGCTGGCATCAGTAGAACGTT
TCTGGAATCTGCTAAAGAGGGGACCAAGGCGAACATCTCCTTCAAGGCCTTCTTCTCACC
CCTCCCCTCTTCCAGACATAGATTCACCCTGAGTTTCTTAACCTTCCTGTGCGGGGTCCC
CAGAGGCTGAGAGCAGGGTGGACGAGCCCTAAGAAAGTGGGGTTCCAGGGCTACCCTTGG
TTTTGACTGGGCAGCTTCCTCTCAGCTCCTTCTGGGGGGCCTCTCACAACCTGGGGAAGT
TCACTTCCCATTCCTGGAGGCAGAAGTGACCAAGCCTGAAAATGGCAGGAATGGCCATAC
AGCCAAGAAAAGCCCACCCACCCCCAGCCCAGGATCTTATGGGGGGAAATGGCGCTGGTT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               119-345, - strand, RNAz p=0.999977
               

               
               438-556, - strand, RNAz p=0.565529

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               119-345, - strand, RNAz p=0.999977
               

               
               438-556, - strand, RNAz p=0.565529

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               117-240, + strand, RNAmicro p=0.931377

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               117-240, + strand, RNAmicro p=0.931377

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               127-261, 684823 MARC 6BOV Bos taurus cDNA 5', mRNA sequence (gb|CB437365.1|), 
blast E-value=5e-24, identity=86.76% 
               

               
               127-261, 704986 MARC 6BOV Bos taurus cDNA 5', mRNA sequence (gb|CB450336.1|), 
blast E-value=5e-24, identity=86.76% 
               

               
               127-261, 968583 MARC 4BOV Bos taurus cDNA 3', mRNA sequence (gb|CK846116.1|), 
blast E-value=5e-24, identity=86.76% 
               

               
               127-261, BovGen_21860 normal cattle brain Bos taurus cDNA clone 
(gb|CO893535.1|), blast E-value=5e-24, identity=86.76% 
               

               
               127-261, 1367620 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN534644.1|), 
blast E-value=5e-24, identity=86.76% 
               

               
               127-261, LB02714.CR_P09 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb|DV889775.1|), 
blast E-value=1e-21, identity=86.03%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               127-261, 684823 MARC 6BOV Bos taurus cDNA 5', mRNA sequence (gb|CB437365.1|), 
blast E-value=5e-24, identity=86.76% 
               

               
               127-261, 704986 MARC 6BOV Bos taurus cDNA 5', mRNA sequence (gb|CB450336.1|), 
blast E-value=5e-24, identity=86.76% 
               

               
               127-261, 968583 MARC 4BOV Bos taurus cDNA 3', mRNA sequence (gb|CK846116.1|), 
blast E-value=5e-24, identity=86.76% 
               

               
               127-261, BovGen_21860 normal cattle brain Bos taurus cDNA clone 
(gb|CO893535.1|), blast E-value=5e-24, identity=86.76% 
               

               
               127-261, 1367620 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN534644.1|), 
blast E-value=5e-24, identity=86.76% 
               

               
               127-261, LB02714.CR_P09 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb|DV889775.1|), 
blast E-value=1e-21, identity=86.03%

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-556, gnl|bosTau2|chr21 (35201971-35201433)
               

               
               1-556, gnl|Hg17|chr14 (90769432-90768887)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-556, gnl|bosTau2|chr21 (35201971-35201433)
               

               
               1-556, gnl|Hg17|chr14 (90769432-90768887)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fli (0.202881)
               

               
               nje (0.16592)
               

               
               pgl (0.118483)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fli (0.202881)
               

               
               nje (0.16592)
               

               
               pgl (0.118483)

	119-345, - strand, RNAz p=0.999977
	438-556, - strand, RNAz p=0.565529

	127-261, 684823 MARC 6BOV Bos taurus cDNA 5', mRNA sequence (gb\|CB437365.1\|), blast E-value=5e-24, identity=86.76%
	127-261, 704986 MARC 6BOV Bos taurus cDNA 5', mRNA sequence (gb\|CB450336.1\|), blast E-value=5e-24, identity=86.76%
	127-261, 968583 MARC 4BOV Bos taurus cDNA 3', mRNA sequence (gb\|CK846116.1\|), blast E-value=5e-24, identity=86.76%
	127-261, BovGen_21860 normal cattle brain Bos taurus cDNA clone (gb\|CO893535.1\|), blast E-value=5e-24, identity=86.76%
	127-261, 1367620 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb\|DN534644.1\|), blast E-value=5e-24, identity=86.76%
	127-261, LB02714.CR_P09 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb\|DV889775.1\|), blast E-value=1e-21, identity=86.03%

	1-556, gnl\|bosTau2\|chr21 (35201971-35201433)
	1-556, gnl\|Hg17\|chr14 (90769432-90768887)