Ss1.1-Pig3-SRG8010I23.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGGTCAGTATCATCCACCGCAAGTTCAGCTCCATCCAGATGCAGCTCAAGCAGAGCACGT GCGAGGCCGTCATGATCCTGCGTTCCCGGTTTCTGGATGCAAGGCGAAAGAGACGGAATT TCAACAAGCAAGCGACAGAAATCCTGAACGAATATTTCTATTCCCATCTCAGCAACCCTT ACCCCAGTGAGGAAGCCAAAGAGGAGTTAGCCAAGAAGTGTGGCATCACAGTGTCCCAGG TATCAAACTGGTTTGGAAATAAGCGAATCCGGTACAAGAAGAACATAGGTAAATTTCAAG AGGAAGCCAATATTTATGCTGCCAAAACAGCTGTCACTGCTACCAATGTGTCAGCCCATG GAAGCCAAGCTAACTCACCCTCAACTCCCAACTCAGCTGGTTCTTCCAGTTCTTTTAACA TGTCAAACTCTGGAGATTTGTTCATGAGCGTGCAGTCACTCAATGGGGATTCTTACCAAG GGGCCCAGGTTGGAGCCAACGTGCAATCACAGGTGGATACCCTTCGCCATGTTATCAGCC AGACAGGAGGATACAGTGACGGACTCGCAGCCAGTCAGATGTACAGTCCGCAGGGCATCA GTGCTAATGGAGGTTGGCAGGATGCTACTACCCCTTCATCAGTGACCTCCCCTACAGAAG GCCCTGGCAGTGTTCACTCTGATACCTCCAACTGATCTCCCAGCAGTCGCATCCCGGCTG ACCCTGTGCCCCCGTAGGGGCAGGGCCAGGAGGGAGGGTTTCTCAACGCTGAAGCGGTCA GACTGGAGGTCGAAGCAATCAGCAAACACAATAAGAGTCTCCTTCTCTTCTCTTCTTTGG GATGCTATTTCAGCCAATCTGGACACTTCTTTATACTCTCTTCCCTTTTTATTTTTCTGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGGTCAGTATCATCCACCGCAAGTTCAGCTCCATCCAGATGCAGCTCAAGCAGAGCACGT GCGAGGCCGTCATGATCCTGCGTTCCCGGTTTCTGGATGCAAGGCGAAAGAGACGGAATT TCAACAAGCAAGCGACAGAAATCCTGAACGAATATTTCTATTCCCATCTCAGCAACCCTT ACCCCAGTGAGGAAGCCAAAGAGGAGTTAGCCAAGAAGTGTGGCATCACAGTGTCCCAGG TATCAAACTGGTTTGGAAATAAGCGAATCCGGTACAAGAAGAACATAGGTAAATTTCAAG AGGAAGCCAATATTTATGCTGCCAAAACAGCTGTCACTGCTACCAATGTGTCAGCCCATG GAAGCCAAGCTAACTCACCCTCAACTCCCAACTCAGCTGGTTCTTCCAGTTCTTTTAACA TGTCAAACTCTGGAGATTTGTTCATGAGCGTGCAGTCACTCAATGGGGATTCTTACCAAG GGGCCCAGGTTGGAGCCAACGTGCAATCACAGGTGGATACCCTTCGCCATGTTATCAGCC AGACAGGAGGATACAGTGACGGACTCGCAGCCAGTCAGATGTACAGTCCGCAGGGCATCA GTGCTAATGGAGGTTGGCAGGATGCTACTACCCCTTCATCAGTGACCTCCCCTACAGAAG GCCCTGGCAGTGTTCACTCTGATACCTCCAACTGATCTCCCAGCAGTCGCATCCCGGCTG ACCCTGTGCCCCCGTAGGGGCAGGGCCAGGAGGGAGGGTTTCTCAACGCTGAAGCGGTCA GACTGGAGGTCGAAGCAATCAGCAAACACAATAAGAGTCTCCTTCTCTTCTCTTCTTTGG GATGCTATTTCAGCCAATCTGGACACTTCTTTATACTCTCTTCCCTTTTTATTTTTCTGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 380-498, + strand, RNAz p=0.706794 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 380-498, + strand, RNAz p=0.706794 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 1-104, gnl|bosTau2|chr23 (23683293-23683396) | |
| 1-104, gnl|canFam2|chr12 (4583376-4583470) | |
| 1-104, gnl|danRer3|chrNA (138846177-138846083) | |
| 1-104, gnl|dasNov1|scaffold_10241 (49981-50075) | |
| 1-104, gnl|echTel1|scaffold_201277 (1463-1368) | |
| 1-104, gnl|fr1|chrUn (48257820-48257914) | |
| 1-104, gnl|galGal2|chrUn (129180952-129180858) | |
| 1-104, gnl|hg17|chr6 (32263720-32263814) | |
| 1-104, gnl|Hg17|chr6 (32263823-32263720) | |
| 1-104, gnl|loxAfr1|scaffold_32936 (4333-4239) | |
| 1-104, gnl|mm7|chr8 (68319688-68319594) | |
| 1-104, gnl|Mm7|chr8 (68319593-68319686) | |
| 1-104, gnl|monDom2|scaffold_42 (17141778-17141684) | |
| 1-104, gnl|oryCun1|scaffold_192689 (1475-1381) | |
| 1-104, gnl|panTro1|chr5 (32632288-32632382) | |
| 1-104, gnl|rheMac2|chr4 (31809916-31810010) | |
| 1-104, gnl|rn3|chr20 (4257186-4257280) | |
| 1-104, gnl|tetNig1|chrUn_random (129374426-129374520) | |
| 1-104, gnl|xenTro1|scaffold_1026 (336987-337081) | |
| 380-514, gnl|bosTau2|chr24 (24256883-24257017) | |
| 380-514, gnl|Hg17|chr9 (125803915-125804049) | |
| 380-514, gnl|Mm7|chr2 (34184192-34184058) | |
| 598-700, gnl|bosTau2|chr24 (24260617-24260718) | |
| 598-700, gnl|Hg17|chr9 (125807660-125807761) | |
| 598-700, gnl|Mm7|chr2 (34180288-34180187) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-104, gnl|bosTau2|chr23 (23683293-23683396) | |
| 1-104, gnl|canFam2|chr12 (4583376-4583470) | |
| 1-104, gnl|danRer3|chrNA (138846177-138846083) | |
| 1-104, gnl|dasNov1|scaffold_10241 (49981-50075) | |
| 1-104, gnl|echTel1|scaffold_201277 (1463-1368) | |
| 1-104, gnl|fr1|chrUn (48257820-48257914) | |
| 1-104, gnl|galGal2|chrUn (129180952-129180858) | |
| 1-104, gnl|hg17|chr6 (32263720-32263814) | |
| 1-104, gnl|Hg17|chr6 (32263823-32263720) | |
| 1-104, gnl|loxAfr1|scaffold_32936 (4333-4239) | |
| 1-104, gnl|mm7|chr8 (68319688-68319594) | |
| 1-104, gnl|Mm7|chr8 (68319593-68319686) | |
| 1-104, gnl|monDom2|scaffold_42 (17141778-17141684) | |
| 1-104, gnl|oryCun1|scaffold_192689 (1475-1381) | |
| 1-104, gnl|panTro1|chr5 (32632288-32632382) | |
| 1-104, gnl|rheMac2|chr4 (31809916-31810010) | |
| 1-104, gnl|rn3|chr20 (4257186-4257280) | |
| 1-104, gnl|tetNig1|chrUn_random (129374426-129374520) | |
| 1-104, gnl|xenTro1|scaffold_1026 (336987-337081) | |
| 380-514, gnl|bosTau2|chr24 (24256883-24257017) | |
| 380-514, gnl|Hg17|chr9 (125803915-125804049) | |
| 380-514, gnl|Mm7|chr2 (34184192-34184058) | |
| 598-700, gnl|bosTau2|chr24 (24260617-24260718) | |
| 598-700, gnl|Hg17|chr9 (125807660-125807761) | |
| 598-700, gnl|Mm7|chr2 (34180288-34180187) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nms (0.213858) | |
| cov (0.132153) | |
| cly (0.120642) |