Non-Coding RNA Search

Ss1.1-Pig3-SRG8010K01.5

Sequence:


               
               GTGGCAGCTAGCGCGCGTGTGGGGGCGTCGGCTGCGCCTGGGGCCTGAGGAGGTGTCGTT
GCCTCGGGCTTCCCTGAGGGAGCACCTCTGGCCCGGTGCGCCGCCGGCCGCGCGGGCACC
GCTGCCGCCGGGGACGGGATGTGACCTTCCCCTGCGTGGAAAAACTCAAGACCTCAGAAC
ATGGGGAGCGCGGGCCTGAGTCATAGCCTGTGCTGGAGACCTCAGGGAACATCTGGGAGG
TGACACATTCCCGGCCCTGCCCTTGGGTTCATGGCCCAGCACTATTTTCAATAGCCATGA
CATGGAAACAACCCAAATGTCCATCGACAGAGGAGTGGATCAAGAACAAGTGGTACATAT
ACACAATGGACTATTACTCAGCCATTGAAAGGAACGAAATACTGGCATTTTTAGCAACAT
GCATGGACCTAGAAATGATCACGCTAAGTGAAGTCAGCCGTACAATGAGACACCAACATC
AAATGCTTTCACCGTCATGCGGAATCTGAAAAAAGGACAGAATGAACTTCTTTGCAGAAC
AGATACTGACTCACAGACTTTGAAAAACTTCTGGTTTCCAGTGGAGAAGTATGGGTGTTG
GGGGGATGTGCTGGAGTTGTGGGATGGAAAGCCTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGGCAGCTAGCGCGCGTGTGGGGGCGTCGGCTGCGCCTGGGGCCTGAGGAGGTGTCGTT
GCCTCGGGCTTCCCTGAGGGAGCACCTCTGGCCCGGTGCGCCGCCGGCCGCGCGGGCACC
GCTGCCGCCGGGGACGGGATGTGACCTTCCCCTGCGTGGAAAAACTCAAGACCTCAGAAC
ATGGGGAGCGCGGGCCTGAGTCATAGCCTGTGCTGGAGACCTCAGGGAACATCTGGGAGG
TGACACATTCCCGGCCCTGCCCTTGGGTTCATGGCCCAGCACTATTTTCAATAGCCATGA
CATGGAAACAACCCAAATGTCCATCGACAGAGGAGTGGATCAAGAACAAGTGGTACATAT
ACACAATGGACTATTACTCAGCCATTGAAAGGAACGAAATACTGGCATTTTTAGCAACAT
GCATGGACCTAGAAATGATCACGCTAAGTGAAGTCAGCCGTACAATGAGACACCAACATC
AAATGCTTTCACCGTCATGCGGAATCTGAAAAAAGGACAGAATGAACTTCTTTGCAGAAC
AGATACTGACTCACAGACTTTGAAAAACTTCTGGTTTCCAGTGGAGAAGTATGGGTGTTG
GGGGGATGTGCTGGAGTTGTGGGATGGAAAGCCTAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|56492562|emb|CAI01941.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|56492562|emb|CAI01941.1|

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               257-632, gnl|bosTau2|chr28 (16364329-16363955)
               


               
               258-630, gnl|bosTau2|chr10 (64534638-64535007)
               


               
               260-625, gnl|bosTau2|chr10 (6516568-6516207)
               


               
               277-615, gnl|bosTau2|chr10 (16598320-16598648)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               257-632, gnl|bosTau2|chr28 (16364329-16363955)
               


               
               258-630, gnl|bosTau2|chr10 (64534638-64535007)
               


               
               260-625, gnl|bosTau2|chr10 (6516568-6516207)
               


               
               277-615, gnl|bosTau2|chr10 (16598320-16598648)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nca (0.136874)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nca (0.136874)

	257-632, gnl\|bosTau2\|chr28 (16364329-16363955)

	258-630, gnl\|bosTau2\|chr10 (64534638-64535007)

	260-625, gnl\|bosTau2\|chr10 (6516568-6516207)

	277-615, gnl\|bosTau2\|chr10 (16598320-16598648)