Ss1.1-Pig3-SRG8010M02.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGATGCCTGTCTGAGCATTGTACATAGTTTGATGTGCCATAGACAAGGTGGAGAGAGTGA AACATTTGCAAAAAGAGCAATTGAAAGTTTGGTAAAGAAGCTGAAGGAGAAAAAAGATGA ATTGGATTCTTTAATAACAGCTATAACCACAAATGGAGCTCACCCTAGCAAATGTGTTAC CATACAGAGAACATTGGATGGGAGGCTTCAGGTGGCTGGTCGGAAAGGATTTCCTCATGT GATTTATGCTCGTCTCTGGAGGTGGCCTGATCTTCACAAAAATGAATTAAAACATGTTAA ATATTGTCAGTATGCATTTGACTTAAAATGTGATAGTGTTTGTGTGAATCCATATCACTA TGAACGAGTTGTATCACCAGGAATTGATCTCTCAGGATTAACACTGCAGAGTAATGCTCC ATCAGGTATGTTGGTGAAGGATGAATATGTTCATGACTTTGAGGGTCAGCCATCATTAGC CACTGAAGGGCATTCAATTCAAACCATCCAGCATCCACCAAGTAATCGTGCATCGACGGA GACATACAGCACCCCAGCTCTGTTAGCTCCATCTGAGTCTAATGCGACCAGCACCACCAA CTTTCCCAACATTCCTGTGGCTTCCACAAGTCAGCCTGCCAGTATACTAGCAGGCAGCCA TAGTGAAGGATTGTTGCAGATAGCTTCAGGGCCTCAGCCAGGACAGCAGCAGAATGGATT TACTGGTCAGCCAGCTACTTACCACCATAACAGCACTACCACCTGGACTGGAAGTAGGAC TGCACCATACCCACCTAATTTGCCTCACCACCAAAACGGCCATCTTCAGCACCACCCACC TATGCCGCCCCATCCCGGACATTACTGGCCAGTTCACAATGAGCTTGCATTCCAGCCTCC AATTTCTAATCATCCTGCTCCTGAGTATTGGTGTTCCATTGCCTACTTTGAAATGGATGT TCAAGTAGGAGAGACGTTTAAGGTTCCTTCAAGCTGTCCTATTGTTACTGTCGATGGATA TGTAGACCCTTCTGGAGGAGATCGCTTTTGCTTGGGTCAACTCTCCAATGTCCACAGGAC AGAAGCCATTGAGAGAGCAAGGTTGCACATAGGCAAAGGTGTGCAGTTGGAATGTAAAGG TGAAGGTGATGTTTGGGTCAGGTGCCTTAGTGACCATGCAGTCTTTGTACAGAGCTACTA CTTAGACAGAGAAGCTGGGCGTGCACCTGGAGATGCTGTTCATAAGATTTATCCAAGTGC ATATATAAAGGTCTTTGATTTGCGTCAGTGTCATCGTCAGATGCAGCAGCAGGCGGCTAC TGCACAAGCTGCAGCAGCTGCCCAGGCAGCAGCCGTGGCAGGAAACATCCCTGGCCCAGG ATCAGTAGGTGGAATAGCCCCAGCTATCAGTAAGTATGCTTTTGATTTTTTTTTTTTTAA GTGTGATAGTTGGTGTTTTATCTTAATTGACTCAGTTCATTAGTTAATTTAAGCAATAAT AGAAATTAAAGGTTTTTATTTACTGGGATAACATTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGATGCCTGTCTGAGCATTGTACATAGTTTGATGTGCCATAGACAAGGTGGAGAGAGTGA AACATTTGCAAAAAGAGCAATTGAAAGTTTGGTAAAGAAGCTGAAGGAGAAAAAAGATGA ATTGGATTCTTTAATAACAGCTATAACCACAAATGGAGCTCACCCTAGCAAATGTGTTAC CATACAGAGAACATTGGATGGGAGGCTTCAGGTGGCTGGTCGGAAAGGATTTCCTCATGT GATTTATGCTCGTCTCTGGAGGTGGCCTGATCTTCACAAAAATGAATTAAAACATGTTAA ATATTGTCAGTATGCATTTGACTTAAAATGTGATAGTGTTTGTGTGAATCCATATCACTA TGAACGAGTTGTATCACCAGGAATTGATCTCTCAGGATTAACACTGCAGAGTAATGCTCC ATCAGGTATGTTGGTGAAGGATGAATATGTTCATGACTTTGAGGGTCAGCCATCATTAGC CACTGAAGGGCATTCAATTCAAACCATCCAGCATCCACCAAGTAATCGTGCATCGACGGA GACATACAGCACCCCAGCTCTGTTAGCTCCATCTGAGTCTAATGCGACCAGCACCACCAA CTTTCCCAACATTCCTGTGGCTTCCACAAGTCAGCCTGCCAGTATACTAGCAGGCAGCCA TAGTGAAGGATTGTTGCAGATAGCTTCAGGGCCTCAGCCAGGACAGCAGCAGAATGGATT TACTGGTCAGCCAGCTACTTACCACCATAACAGCACTACCACCTGGACTGGAAGTAGGAC TGCACCATACCCACCTAATTTGCCTCACCACCAAAACGGCCATCTTCAGCACCACCCACC TATGCCGCCCCATCCCGGACATTACTGGCCAGTTCACAATGAGCTTGCATTCCAGCCTCC AATTTCTAATCATCCTGCTCCTGAGTATTGGTGTTCCATTGCCTACTTTGAAATGGATGT TCAAGTAGGAGAGACGTTTAAGGTTCCTTCAAGCTGTCCTATTGTTACTGTCGATGGATA TGTAGACCCTTCTGGAGGAGATCGCTTTTGCTTGGGTCAACTCTCCAATGTCCACAGGAC AGAAGCCATTGAGAGAGCAAGGTTGCACATAGGCAAAGGTGTGCAGTTGGAATGTAAAGG TGAAGGTGATGTTTGGGTCAGGTGCCTTAGTGACCATGCAGTCTTTGTACAGAGCTACTA CTTAGACAGAGAAGCTGGGCGTGCACCTGGAGATGCTGTTCATAAGATTTATCCAAGTGC ATATATAAAGGTCTTTGATTTGCGTCAGTGTCATCGTCAGATGCAGCAGCAGGCGGCTAC TGCACAAGCTGCAGCAGCTGCCCAGGCAGCAGCCGTGGCAGGAAACATCCCTGGCCCAGG ATCAGTAGGTGGAATAGCCCCAGCTATCAGTAAGTATGCTTTTGATTTTTTTTTTTTTAA GTGTGATAGTTGGTGTTTTATCTTAATTGACTCAGTTCATTAGTTAATTTAAGCAATAAT AGAAATTAAAGGTTTTTATTTACTGGGATAACATTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1307-1426, - strand, RNAz p=0.660947 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1307-1426, - strand, RNAz p=0.660947 |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 1-213, gnl|bosTau2|chr24 (32986904-32987116) | |
| 1-213, gnl|canFam2|chr1 (26944876-26944620) | |
| 1-213, gnl|danRer3|chr12 (22868736-22868987) | |
| 1-213, gnl|dasNov1|scaffold_13561 (52455-52199) | |
| 1-213, gnl|echTel1|scaffold_313607 (64417-64163) | |
| 1-213, gnl|fr1|chrUn (144653079-144652834) | |
| 1-213, gnl|hg17|chr18 (46827421-46827675) | |
| 1-213, gnl|Hg17|chr18 (46827453-46827665) | |
| 1-213, gnl|loxAfr1|scaffold_8244 (69084-68830) | |
| 1-213, gnl|mm7|chr18 (74072243-74071992) | |
| 1-213, gnl|Mm7|chr18 (74072209-74071997) | |
| 1-213, gnl|monDom2|scaffold_95 (271346-271600) | |
| 1-213, gnl|oryCun1|scaffold_182097 (42532-42276) | |
| 1-213, gnl|panTro1|chr17 (43424126-43424380) | |
| 1-213, gnl|rheMac2|chr18 (44147920-44148174) | |
| 1-213, gnl|rn3|chr18 (70534682-70534431) | |
| 1-213, gnl|tetNig1|chr12 (7788321-7788566) | |
| 1-213, gnl|xenTro1|scaffold_731 (519183-519434) | |
| 416-634, gnl|bosTau2|chr24 (32993407-32993625) | |
| 416-634, gnl|Hg17|chr18 (46835148-46835366) | |
| 416-634, gnl|Mm7|chr18 (74057204-74056989) | |
| 750-867, gnl|bosTau2|chr24 (32996789-32996906) | |
| 750-867, gnl|Hg17|chr18 (46838708-46838825) | |
| 750-867, gnl|Mm7|chr18 (74053020-74052903) | |
| 897-1103, gnl|bosTau2|chr24 (33004592-33004797) | |
| 897-1103, gnl|Hg17|chr18 (46845771-46845976) | |
| 897-1103, gnl|Mm7|chr18 (74044265-74044060) | |
| 1268-1531, gnl|bosTau2|chr24 (33015519-33015783) | |
| 1268-1531, gnl|Hg17|chr18 (46857003-46857264) | |
| 1268-1531, gnl|Mm7|chr18 (74036260-74036003) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-213, gnl|bosTau2|chr24 (32986904-32987116) | |
| 1-213, gnl|canFam2|chr1 (26944876-26944620) | |
| 1-213, gnl|danRer3|chr12 (22868736-22868987) | |
| 1-213, gnl|dasNov1|scaffold_13561 (52455-52199) | |
| 1-213, gnl|echTel1|scaffold_313607 (64417-64163) | |
| 1-213, gnl|fr1|chrUn (144653079-144652834) | |
| 1-213, gnl|hg17|chr18 (46827421-46827675) | |
| 1-213, gnl|Hg17|chr18 (46827453-46827665) | |
| 1-213, gnl|loxAfr1|scaffold_8244 (69084-68830) | |
| 1-213, gnl|mm7|chr18 (74072243-74071992) | |
| 1-213, gnl|Mm7|chr18 (74072209-74071997) | |
| 1-213, gnl|monDom2|scaffold_95 (271346-271600) | |
| 1-213, gnl|oryCun1|scaffold_182097 (42532-42276) | |
| 1-213, gnl|panTro1|chr17 (43424126-43424380) | |
| 1-213, gnl|rheMac2|chr18 (44147920-44148174) | |
| 1-213, gnl|rn3|chr18 (70534682-70534431) | |
| 1-213, gnl|tetNig1|chr12 (7788321-7788566) | |
| 1-213, gnl|xenTro1|scaffold_731 (519183-519434) | |
| 416-634, gnl|bosTau2|chr24 (32993407-32993625) | |
| 416-634, gnl|Hg17|chr18 (46835148-46835366) | |
| 416-634, gnl|Mm7|chr18 (74057204-74056989) | |
| 750-867, gnl|bosTau2|chr24 (32996789-32996906) | |
| 750-867, gnl|Hg17|chr18 (46838708-46838825) | |
| 750-867, gnl|Mm7|chr18 (74053020-74052903) | |
| 897-1103, gnl|bosTau2|chr24 (33004592-33004797) | |
| 897-1103, gnl|Hg17|chr18 (46845771-46845976) | |
| 897-1103, gnl|Mm7|chr18 (74044265-74044060) | |
| 1268-1531, gnl|bosTau2|chr24 (33015519-33015783) | |
| 1268-1531, gnl|Hg17|chr18 (46857003-46857264) | |
| 1268-1531, gnl|Mm7|chr18 (74036260-74036003) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| cbe (0.239234) | |
| cmu (0.186393) | |
| rec (0.17307) | |
| duo (0.172801) | |
| cki (0.165235) | |
| ese (0.126502) | |
| tra (0.123092) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbe (0.239234) | |
| cmu (0.186393) | |
| rec (0.17307) | |
| duo (0.172801) | |
| cki (0.165235) | |
| ese (0.126502) | |
| tra (0.123092) |