Non-Coding RNA Search

Ss1.1-Pig3-SRG8010N13.5

Sequence:


               
               TGCCTTCCGACGCCGCCTGGGTCAGCGTGTCAAACCGGGCTCAGTTTCCCAGCAGCGGGC
TCGCCATGAAAGCACAAGCTGTTAGCCCTTGTGTCCAGAACTTCTGTTCTGCCCTAGATT
CTAAACTGCAGGTGCAGTTAGAGGACCTCCTGGCTTACCTCCCCTCCGGTGATCCAGCGC
TGCCCAAGGACGTCTCCCCCGCGCAAGCCAAGAACTGCGCCTTCGACAGATACGCAGATG
CGGGGACTGTGCAGGACATGCTGCGGACACACTCCACGGCCTGCATCAAGCGCGTCCTGA
ACTGCATCCAGGCAGAGCTGCAGAGCGTCGAGCAGGCTCTCCAGGGGCAGCAGGATGTCC
TCGGCGGGGTCAAGCTGCATGCAGTCCTTTTCATGGCCAGACTTTGCCAGTCGCTGGGAG
AACTGTGTCCCCACCTGAAGCAGTGCATCTTGGGAAAATCAGGGACCACCGAGAAATCAA
CAAGGGATTCTAGGGCTCTAAAAAAGCAGGGGAAGGGGAAAGCTCAAGAAATGATTCCCA
TGCAGGCCAAGTGGCAGGAAGTTAAGGAGCTCCTCCTGCAGCAGAGCGTGATGGGCTACC
GGGTCTGGAGCTCAGTGGTTGTGAAAGTTTTGGCTCATGGATTCACCCAGTCATTACTGT
TAGATGATGCTGGCTCAGTCCTGGCCACAGCCACCAGTTGGGATGAACTAGAAATTCAGG
AAGAAGCAGAGTCTGGCAGCAGCGTCACGTCCAAGATCCGACTCCCTGTCCAGCCGTCCT
GGTATGTACAGTCCTTCCTGTTTAGCTTATGCCATGAAGTTAATCGGGTTGGAGGCCATG
CCTTGCCAAAGGTGACGCTGCAGGAGATGCTGAAAAGCTGTATGGTTCGAGTAGTGGCCG
CCTATGATAAACTTGCAGAAGAAAAGCAGTTGAAGAAAGAAGGTGCATTTCCAATGACCC
ATAATCGGGCACTGCAGCTGCTTTATGATCTGCGTTATCTCAACATTGTGCTGACAGCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCCTTCCGACGCCGCCTGGGTCAGCGTGTCAAACCGGGCTCAGTTTCCCAGCAGCGGGC
TCGCCATGAAAGCACAAGCTGTTAGCCCTTGTGTCCAGAACTTCTGTTCTGCCCTAGATT
CTAAACTGCAGGTGCAGTTAGAGGACCTCCTGGCTTACCTCCCCTCCGGTGATCCAGCGC
TGCCCAAGGACGTCTCCCCCGCGCAAGCCAAGAACTGCGCCTTCGACAGATACGCAGATG
CGGGGACTGTGCAGGACATGCTGCGGACACACTCCACGGCCTGCATCAAGCGCGTCCTGA
ACTGCATCCAGGCAGAGCTGCAGAGCGTCGAGCAGGCTCTCCAGGGGCAGCAGGATGTCC
TCGGCGGGGTCAAGCTGCATGCAGTCCTTTTCATGGCCAGACTTTGCCAGTCGCTGGGAG
AACTGTGTCCCCACCTGAAGCAGTGCATCTTGGGAAAATCAGGGACCACCGAGAAATCAA
CAAGGGATTCTAGGGCTCTAAAAAAGCAGGGGAAGGGGAAAGCTCAAGAAATGATTCCCA
TGCAGGCCAAGTGGCAGGAAGTTAAGGAGCTCCTCCTGCAGCAGAGCGTGATGGGCTACC
GGGTCTGGAGCTCAGTGGTTGTGAAAGTTTTGGCTCATGGATTCACCCAGTCATTACTGT
TAGATGATGCTGGCTCAGTCCTGGCCACAGCCACCAGTTGGGATGAACTAGAAATTCAGG
AAGAAGCAGAGTCTGGCAGCAGCGTCACGTCCAAGATCCGACTCCCTGTCCAGCCGTCCT
GGTATGTACAGTCCTTCCTGTTTAGCTTATGCCATGAAGTTAATCGGGTTGGAGGCCATG
CCTTGCCAAAGGTGACGCTGCAGGAGATGCTGAAAAGCTGTATGGTTCGAGTAGTGGCCG
CCTATGATAAACTTGCAGAAGAAAAGCAGTTGAAGAAAGAAGGTGCATTTCCAATGACCC
ATAATCGGGCACTGCAGCTGCTTTATGATCTGCGTTATCTCAACATTGTGCTGACAGCCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|8655681|emb|CAB94881.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|8655681|emb|CAB94881.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-119, - strand, RNAz p=0.585209

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, - strand, RNAz p=0.585209

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-624, gnl|bosTau2|chr19 (52665213-52664590)
               

               
               1-624, gnl|Hg17|chr17 (68709009-68709632)
               

               
               1-624, gnl|Mm7|chr11 (113765065-113765691)
               


               
               627-773, gnl|bosTau2|chr19 (52664051-52663905)
               

               
               627-773, gnl|Hg17|chr17 (68710734-68710880)
               

               
               627-773, gnl|Mm7|chr11 (113766048-113766194)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-624, gnl|bosTau2|chr19 (52665213-52664590)
               

               
               1-624, gnl|Hg17|chr17 (68709009-68709632)
               

               
               1-624, gnl|Mm7|chr11 (113765065-113765691)
               


               
               627-773, gnl|bosTau2|chr19 (52664051-52663905)
               

               
               627-773, gnl|Hg17|chr17 (68710734-68710880)
               

               
               627-773, gnl|Mm7|chr11 (113766048-113766194)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cga (0.279096)
               

               
               eep (0.122564)
               

               
               cty (0.10408)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cga (0.279096)
               

               
               eep (0.122564)
               

               
               cty (0.10408)

	1-624, gnl\|bosTau2\|chr19 (52665213-52664590)
	1-624, gnl\|Hg17\|chr17 (68709009-68709632)
	1-624, gnl\|Mm7\|chr11 (113765065-113765691)

	627-773, gnl\|bosTau2\|chr19 (52664051-52663905)
	627-773, gnl\|Hg17\|chr17 (68710734-68710880)
	627-773, gnl\|Mm7\|chr11 (113766048-113766194)