Non-Coding RNA Search

Ss1.1-Pig3-SRG8010N24.5

Sequence:


               
               ATTAAGTCGTGCCGATGGCTCTCAGATGGCAGAGGAAAGGATAATGGAAGAGCAGCAGAA
AGGCCGTAGTAGTAAAAAGACAAAGAAAAAGAAGAAAGTTCGCCCATTGAGCCGAGAAAT
CACAATGAGCCAGGCATATCAGAACATGTGTGCCGGGATGTTTAAAACCATGGTAGCATT
TGACATGGATGGCAAAGTACGAAAACCCAAGTTTGAGCTCGATAGTGAACAAGTTCGATA
TGAGCACAGATTTGCCCCATTTAACAGTGTGATGACACCACCACCAGTGCACTATCTGCA
GTTCAAGGAAATGTCTGACCTCAATAAATACAGCCCTCCTCCGCAGTCTCCAGAACTATA
TGTGGCAGCTAGTAAGCACTTTCAGCAGGCAAAAATGATACTGGAAAATATCCCAAACCC
GGACCATGAGGTCAGTAGAATTTTAAAGGTTGCCAAACCCAACTTTGTGGTTATGAAGTT
GCTGGCAGGAGGACACAAGAAGGAATCTAAGGTTCCGCCTGAATTTGATTTCTCTGCTCA
CAAATATTTTCCTGTTGTGAAACTTGTTTGAGAAAGACTGAAAAGGCCACCAAAGGGGTG
GAATCTGCGATCAGATTCTACTCTTAGATGATCTGTCATCAGTCTTACCACATAAGTGAA
GTGAAAGTTCTTGGATAACAACCCATTATAAGGAATACTTTTAATTTGACAGCCTTATAT
GACATGAATGAAAACTGCTGTTTTAAAGTGGTTTATTATGTTCCATGGATGAAACTGGTC
TTATTGAATGCATTGATGAACGTTATATGGTTTTATTACAGATTTAATCATAAATCATTT
TTTATGAATGAGTGAAAATAGTGTTTGTAAAGGTTAATAAATTTCTTGACAAAAAATGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTAAGTCGTGCCGATGGCTCTCAGATGGCAGAGGAAAGGATAATGGAAGAGCAGCAGAA
AGGCCGTAGTAGTAAAAAGACAAAGAAAAAGAAGAAAGTTCGCCCATTGAGCCGAGAAAT
CACAATGAGCCAGGCATATCAGAACATGTGTGCCGGGATGTTTAAAACCATGGTAGCATT
TGACATGGATGGCAAAGTACGAAAACCCAAGTTTGAGCTCGATAGTGAACAAGTTCGATA
TGAGCACAGATTTGCCCCATTTAACAGTGTGATGACACCACCACCAGTGCACTATCTGCA
GTTCAAGGAAATGTCTGACCTCAATAAATACAGCCCTCCTCCGCAGTCTCCAGAACTATA
TGTGGCAGCTAGTAAGCACTTTCAGCAGGCAAAAATGATACTGGAAAATATCCCAAACCC
GGACCATGAGGTCAGTAGAATTTTAAAGGTTGCCAAACCCAACTTTGTGGTTATGAAGTT
GCTGGCAGGAGGACACAAGAAGGAATCTAAGGTTCCGCCTGAATTTGATTTCTCTGCTCA
CAAATATTTTCCTGTTGTGAAACTTGTTTGAGAAAGACTGAAAAGGCCACCAAAGGGGTG
GAATCTGCGATCAGATTCTACTCTTAGATGATCTGTCATCAGTCTTACCACATAAGTGAA
GTGAAAGTTCTTGGATAACAACCCATTATAAGGAATACTTTTAATTTGACAGCCTTATAT
GACATGAATGAAAACTGCTGTTTTAAAGTGGTTTATTATGTTCCATGGATGAAACTGGTC
TTATTGAATGCATTGATGAACGTTATATGGTTTTATTACAGATTTAATCATAAATCATTT
TTTATGAATGAGTGAAAATAGTGTTTGTAAAGGTTAATAAATTTCTTGACAAAAAATGCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26333197|dbj|BAC30316.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26333197|dbj|BAC30316.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               441-660, - strand, RNAz p=0.999205

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               441-660, - strand, RNAz p=0.999205

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-834, gnl|bosTau2|chr16 (34759072-34759915)
               

               
               1-834, gnl|Hg17|chr9 (85861047-85866697)
               

               
               1-834, gnl|Mm7|chr12 (60107323-60108154)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-834, gnl|bosTau2|chr16 (34759072-34759915)
               

               
               1-834, gnl|Hg17|chr9 (85861047-85866697)
               

               
               1-834, gnl|Mm7|chr12 (60107323-60108154)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               csk (0.281492)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               bfe (0.149858)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csk (0.281492)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               bfe (0.149858)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)

	1-834, gnl\|bosTau2\|chr16 (34759072-34759915)
	1-834, gnl\|Hg17\|chr9 (85861047-85866697)
	1-834, gnl\|Mm7\|chr12 (60107323-60108154)

	csk (0.281492)
	eye (0.170503)
	nje (0.16592)
	mga (0.160205)
	tbr (0.154178)
	bfe (0.149858)
	pla (0.133672)
	lyg (0.133103)