Non-Coding RNA Search

Ss1.1-Pig3-SRG8010O09.5

Sequence:


               
               ACCTATGGGTCAATGAGGACATCAAGGAGGAAATTAAGGAGTTTCCAT------------
------------------------------------------------------------
------------------------------------------------------------
CATTGCTGTGGCTGTGGTGTAGGCTGGCATATGCCACAACATATGGCTCTAAAAACCAAA
AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA
AAGAAAGAAGGAGGGAGGGAAGGAAAGAAGAAAGACCCAGCTGCCTTGACAGTTGGTGGG
ATTGAATCCCTTACAGAGGGTCATCATGGTGGCACAATCAGCAGGCTATCTGATGGTGGC
GATTCAGCAGGTCAATGTCTGGGGCTCCTGACCTTCAAGCCATATCCCAATAAGACAATT
TCACATGAGACAGCAAACCAGGCCAGATACATGCATTGCCCAACTCTGATTATTATTAAG
TCATCATGTAAGTAAATTTTACTATTCATTTTTTTCACTGCAAGACCAACTCCATTGACC
AACTGACATCTCTCTCAGAGAGAATAATTTGTGATACAAAAGAGATAAAAGTACTATAAA
ACTATGCATTTATTTAAACTGCATATTGACAATATGACTTTTTCTCTAAAAATTATAATG
TTAAGAACATTGCTGTCAAAAATATATACAGAGAATAATAGGGGTTTGGACAGCAGGGAG
GATAAATGGCTCCTGTCTAGACCACACTAGGCAGCTCAGGTATTTGGGGATGTGTCCAGT
GTTAGCTTCTATTCTTCCTTATTTATCATGGAGAAAGTGCCTTTAGGGCACTCTTCTATT
GCAAAGGATTGCCCTTTTCTTTTCTTTTACCTTTCCCACAAATTATTCCTTTCAAATCTG
AATAACAAATAATCCATGGCTTATGATTTCATCAAAATCTACTTTTACTGTTAGTCCTAT
GCTGTACATGAATATAAATCCTACAGTCTCCATGAATCTAAATTTGCCTGAGAAAAGGAA
CATAAAAAGTTTAAATACTTAAGCAACATTGCTCAAGTCAGCAGAATATCTTGGAGTATT
CAAACTAAAACATGAACATTTCTTAATAAGATATTTAAGTCGTTTAAAATATCCTTTGAT
CTTACTCTCAATCAAAAAACTGAGAGCATTTTCCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCTATGGGTCAATGAGGACATCAAGGAGGAAATTAAGGAGTTTCCAT------------
------------------------------------------------------------
------------------------------------------------------------
CATTGCTGTGGCTGTGGTGTAGGCTGGCATATGCCACAACATATGGCTCTAAAAACCAAA
AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA
AAGAAAGAAGGAGGGAGGGAAGGAAAGAAGAAAGACCCAGCTGCCTTGACAGTTGGTGGG
ATTGAATCCCTTACAGAGGGTCATCATGGTGGCACAATCAGCAGGCTATCTGATGGTGGC
GATTCAGCAGGTCAATGTCTGGGGCTCCTGACCTTCAAGCCATATCCCAATAAGACAATT
TCACATGAGACAGCAAACCAGGCCAGATACATGCATTGCCCAACTCTGATTATTATTAAG
TCATCATGTAAGTAAATTTTACTATTCATTTTTTTCACTGCAAGACCAACTCCATTGACC
AACTGACATCTCTCTCAGAGAGAATAATTTGTGATACAAAAGAGATAAAAGTACTATAAA
ACTATGCATTTATTTAAACTGCATATTGACAATATGACTTTTTCTCTAAAAATTATAATG
TTAAGAACATTGCTGTCAAAAATATATACAGAGAATAATAGGGGTTTGGACAGCAGGGAG
GATAAATGGCTCCTGTCTAGACCACACTAGGCAGCTCAGGTATTTGGGGATGTGTCCAGT
GTTAGCTTCTATTCTTCCTTATTTATCATGGAGAAAGTGCCTTTAGGGCACTCTTCTATT
GCAAAGGATTGCCCTTTTCTTTTCTTTTACCTTTCCCACAAATTATTCCTTTCAAATCTG
AATAACAAATAATCCATGGCTTATGATTTCATCAAAATCTACTTTTACTGTTAGTCCTAT
GCTGTACATGAATATAAATCCTACAGTCTCCATGAATCTAAATTTGCCTGAGAAAAGGAA
CATAAAAAGTTTAAATACTTAAGCAACATTGCTCAAGTCAGCAGAATATCTTGGAGTATT
CAAACTAAAACATGAACATTTCTTAATAAGATATTTAAGTCGTTTAAAATATCCTTTGAT
CTTACTCTCAATCAAAAAACTGAGAGCATTTTCCCC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q8VED7_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8VED7_MOUSE

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               344-891, gnl|bosTau2|chr20 (20283320-20282773)
               

               
               344-891, gnl|Hg17|chr5 (41183212-41182667)
               


               
               950-1104, gnl|bosTau2|chr20 (20281936-20281783)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               344-891, gnl|bosTau2|chr20 (20283320-20282773)
               

               
               344-891, gnl|Hg17|chr5 (41183212-41182667)
               


               
               950-1104, gnl|bosTau2|chr20 (20281936-20281783)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cte (0.29274)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)

	344-891, gnl\|bosTau2\|chr20 (20283320-20282773)
	344-891, gnl\|Hg17\|chr5 (41183212-41182667)

	950-1104, gnl\|bosTau2\|chr20 (20281936-20281783)