Ss1.1-Pig3-SRG8010O16.3
|
TGCAACTCAGCTGTTTCTGGAGAAAAATTACCAGAACACACTTGCAAGTCCTGGCTGTGT
GGGCCAAGACAAAAAGAATTCCACATTCTGGAAAAGTCTGCTGCTTCGCATTTGGTCCTG
GGGATCTTTCTGCACAGAGACAACTTTTCAGGCTAAGGTACCTGCCAAGATGCTCCACTT
GCAGAGTGCCCAGATGCTGCTGAGGCTAGAGAAATGCTTGAGGAAGAGCCTTCCCGAGTC
CTTAAAGGTTTATGGCACCGTCTTCCACATGAACCAAGGAAACCCCTTCAAGCTAAAGGC
CTTGGTGGACAAGTGGCCTGATTTTAATACAGTGGTTATTCGCCCTCAGGAGCAGGAGAT
GACAGATGACTTTGATCACCACACCAATACCTACCAAATCTATTCTAAGGATCTCAAGAA
CTGTCACGAAGCCCTTAGCACATCAGATGTCATCAACTGGAAGCAGCATTTGCAGATCCA
GAGTTCACAGCCCAGCCTGGACGAGGTTATACAGAATCTTGCAACCACTAAATTCATTAA
GGTCAAGCAAACACAACGCATTCTCTATATAACGCCTGAGATGGCAATAAAACTGCTTCC
TTCCCTGCCGGAGACAAAGAACTTACCTCCTGGATACAGCAGACCCAAAGCCAGTAACCA
AGAGGTGTTTCAAGTCTCATCCATGGATGTTACCCACGCTGCCTTGGTGAATAAGTTCTG
GCATTTTGGTGGCAACGAGAGGAGCCAGAGATTCATTGAGCGATGTATCCGCAACTTTCT
CTCCATCTGCTTGCTGGGGCCTGAGGGCACCCCTATATCTTGGTCCCTGATGGACCAGAC
AGGAGAGATACGGATGGGGGCCACCCTGCCTGAGTACCGGGGCCAGGGTCTCATCTCCAA
TTTGCTGTGTGTCCACATCCAGGCTCTGGATGAACGTGGCTTCCCCACATATATGCATAC
AGACAAAGCCAACAAAACCGTACAGAAAATCAGTCACAATCTGCATCACATCTCCTTTCC
TTGTGGTTGGAACCAGTGGAACTGTGTGCCTCTATAAAGCAGCTCTGAAGCCACCATTGT
GTTGGCCAGAGACATGCATGGGTGGCTAGAAAGAAAGAAAAAAGTATAATCAGCAGTAAA
GCAGTGGGTGTTGTTTGGGCTCTGGGAAAGCAGCATGATTGGTCCACAGAAGCACTAGAG
TTCCTGCTCACAAATCACTCATGAAATCTCTTGCTTCCAGCAGACCTGGCATGACCAGAC
CTGCCTATTTCCTCCACATCCCAACCCTGGAAACCACCATGCTATTCTGTGTTTCTAGGA
GTTCAACTTTTTTTTTTTAATATTTCACATATAAGGGATATAATGCAATACTTCTGTTTC
TGTCTGGTTTATTTTCCCGATTCTCAATTTTCTTCTAATGCATATGGCTAGTAAGGAAAG
TATCCATAATCAATAAAGCATATG
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TGCAACTCAGCTGTTTCTGGAGAAAAATTACCAGAACACACTTGCAAGTCCTGGCTGTGT
GGGCCAAGACAAAAAGAATTCCACATTCTGGAAAAGTCTGCTGCTTCGCATTTGGTCCTG
GGGATCTTTCTGCACAGAGACAACTTTTCAGGCTAAGGTACCTGCCAAGATGCTCCACTT
GCAGAGTGCCCAGATGCTGCTGAGGCTAGAGAAATGCTTGAGGAAGAGCCTTCCCGAGTC
CTTAAAGGTTTATGGCACCGTCTTCCACATGAACCAAGGAAACCCCTTCAAGCTAAAGGC
CTTGGTGGACAAGTGGCCTGATTTTAATACAGTGGTTATTCGCCCTCAGGAGCAGGAGAT
GACAGATGACTTTGATCACCACACCAATACCTACCAAATCTATTCTAAGGATCTCAAGAA
CTGTCACGAAGCCCTTAGCACATCAGATGTCATCAACTGGAAGCAGCATTTGCAGATCCA
GAGTTCACAGCCCAGCCTGGACGAGGTTATACAGAATCTTGCAACCACTAAATTCATTAA
GGTCAAGCAAACACAACGCATTCTCTATATAACGCCTGAGATGGCAATAAAACTGCTTCC
TTCCCTGCCGGAGACAAAGAACTTACCTCCTGGATACAGCAGACCCAAAGCCAGTAACCA
AGAGGTGTTTCAAGTCTCATCCATGGATGTTACCCACGCTGCCTTGGTGAATAAGTTCTG
GCATTTTGGTGGCAACGAGAGGAGCCAGAGATTCATTGAGCGATGTATCCGCAACTTTCT
CTCCATCTGCTTGCTGGGGCCTGAGGGCACCCCTATATCTTGGTCCCTGATGGACCAGAC
AGGAGAGATACGGATGGGGGCCACCCTGCCTGAGTACCGGGGCCAGGGTCTCATCTCCAA
TTTGCTGTGTGTCCACATCCAGGCTCTGGATGAACGTGGCTTCCCCACATATATGCATAC
AGACAAAGCCAACAAAACCGTACAGAAAATCAGTCACAATCTGCATCACATCTCCTTTCC
TTGTGGTTGGAACCAGTGGAACTGTGTGCCTCTATAAAGCAGCTCTGAAGCCACCATTGT
GTTGGCCAGAGACATGCATGGGTGGCTAGAAAGAAAGAAAAAAGTATAATCAGCAGTAAA
GCAGTGGGTGTTGTTTGGGCTCTGGGAAAGCAGCATGATTGGTCCACAGAAGCACTAGAG
TTCCTGCTCACAAATCACTCATGAAATCTCTTGCTTCCAGCAGACCTGGCATGACCAGAC
CTGCCTATTTCCTCCACATCCCAACCCTGGAAACCACCATGCTATTCTGTGTTTCTAGGA
GTTCAACTTTTTTTTTTTAATATTTCACATATAAGGGATATAATGCAATACTTCTGTTTC
TGTCTGGTTTATTTTCCCGATTCTCAATTTTCTTCTAATGCATATGGCTAGTAAGGAAAG
TATCCATAATCAATAAAGCATATG
|
|
gi|3004445|emb|CAA04726.1| |
Protein identifier
|
gi|3004445|emb|CAA04726.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
3-152, gnl|bosTau2|chr15 (52639992-52640143) |
| |
|
353-484, gnl|bosTau2|chr15 (52598546-52598677) |
|
353-484, gnl|canFam2|chr18 (40735900-40735745) |
|
353-484, gnl|dasNov1|scaffold_8915 (1763-1608) |
|
353-484, gnl|echTel1|scaffold_37440 (4458-4590) |
|
353-484, gnl|hg17|chr11 (58282574-58282730) |
|
353-484, gnl|Hg17|chr11 (58282703-58282572) |
|
353-484, gnl|loxAfr1|scaffold_35954 (12137-12296) |
|
353-484, gnl|mm7|chr19 (12303855-12303696) |
|
353-484, gnl|Mm7|chr19 (12303724-12303853) |
|
353-484, gnl|oryCun1|scaffold_167958 (15096-14936) |
|
353-484, gnl|panTro1|chr9 (59222363-59222519) |
|
353-484, gnl|rheMac2|chr14 (14866318-14866157) |
|
353-484, gnl|rn3|chr1 (215786360-215786201) |
| |
|
653-1338, gnl|bosTau2|chr15 (52605208-52605892) |
|
653-1338, gnl|Hg17|chr11 (58273447-58272847) |
|
653-1338, gnl|Mm7|chr19 (12306835-12307428) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
3-152, gnl|bosTau2|chr15 (52639992-52640143) |
| |
|
353-484, gnl|bosTau2|chr15 (52598546-52598677) |
|
353-484, gnl|canFam2|chr18 (40735900-40735745) |
|
353-484, gnl|dasNov1|scaffold_8915 (1763-1608) |
|
353-484, gnl|echTel1|scaffold_37440 (4458-4590) |
|
353-484, gnl|hg17|chr11 (58282574-58282730) |
|
353-484, gnl|Hg17|chr11 (58282703-58282572) |
|
353-484, gnl|loxAfr1|scaffold_35954 (12137-12296) |
|
353-484, gnl|mm7|chr19 (12303855-12303696) |
|
353-484, gnl|Mm7|chr19 (12303724-12303853) |
|
353-484, gnl|oryCun1|scaffold_167958 (15096-14936) |
|
353-484, gnl|panTro1|chr9 (59222363-59222519) |
|
353-484, gnl|rheMac2|chr14 (14866318-14866157) |
|
353-484, gnl|rn3|chr1 (215786360-215786201) |
| |
|
653-1338, gnl|bosTau2|chr15 (52605208-52605892) |
|
653-1338, gnl|Hg17|chr11 (58273447-58272847) |
|
653-1338, gnl|Mm7|chr19 (12306835-12307428) |
|
kid (0.389206) |
|
mgp (0.230681) |
|
lun (0.150489) |
|
eje (0.0988338) |
|
kid (0.389206) |
|
mgp (0.230681) |
|
lun (0.150489) |
|
eje (0.0988338) |
