Non-Coding RNA Search

Ss1.1-Pig3-SRG8010P11.3

Sequence:


               
               TCCTGCAGGACCGCAGGTCGGGGACTCACGGTTCTGCGTTCTCGTCCTCCGGTGCAGACC
TTCGGGAAGTAGGTGCAGGCCTGATCTAATCTTCTGTCTGTACGGAGTGGAAGAGAACAA
TGCAGAAGGATTCCGGCCCACTAGTGCCTTTACATTGGATTGGCTTTGGTTATGCAGCAC
TGGTTGCTTCCGGTGGGATCATTGGCTATGCAAAAGCAGGCAGCGTCCCGTCCCTGGCGG
CCGGGCTCCTCTTCGGTGGCCTAGCGGGCCTGGGTGCCTACCAGCTGTCTCAGGATCCAA
GGAACATTTGGGTTTTCTTAGTTACATCTGGAACCTTGGCTGGCATCATGGGAATGAGAT
TCTACCACTCTGGAAAATTTATGCCTGCGGGCTTGATTGCAGGTGCCAGTTTGCTGATGG
TCGCCAAACTTGGAATTAGTGTGTTGAGTAAACCCCATCCGTAGTAGTCACGGCCCCGCT
TGGACTCATGAAGAATTGTTAACCTTCCCACTATTTCTTGTGCATTAATACGTGCAGCGT
CTTCACATATTCTGAAACCTTAAAACCCAAAACAACACTGAACTTTGCAGAGAAAAAAAA
TCAGTCATTATGGTTCCGACTCTAAAGAGGTGGGTGTGTGTAACACAAGATCTTTCTCTC
GTCGTGTCCTCGTTCAGCTTGATTCTTTTTATTGGTCTCCTCTCTTCTTTCTGTACCTAT
AGGTAAAATCTCAAAGTAAAAAAGTTAGGTGTCACCACTGGGGCCCCTGAAACCCCCTGC
CCTACTCAGGACCAGTGTGAAAGAAACCTTTTAATGAGAATTAGGGTATCAGTTCTTTAG
CTCATCTTAGAGCACAGACCTGCTTTGAAATTATGTTCAATGAAATCAATGAAAATAAAG
TTTTCTGTTTATTATTAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCTGCAGGACCGCAGGTCGGGGACTCACGGTTCTGCGTTCTCGTCCTCCGGTGCAGACC
TTCGGGAAGTAGGTGCAGGCCTGATCTAATCTTCTGTCTGTACGGAGTGGAAGAGAACAA
TGCAGAAGGATTCCGGCCCACTAGTGCCTTTACATTGGATTGGCTTTGGTTATGCAGCAC
TGGTTGCTTCCGGTGGGATCATTGGCTATGCAAAAGCAGGCAGCGTCCCGTCCCTGGCGG
CCGGGCTCCTCTTCGGTGGCCTAGCGGGCCTGGGTGCCTACCAGCTGTCTCAGGATCCAA
GGAACATTTGGGTTTTCTTAGTTACATCTGGAACCTTGGCTGGCATCATGGGAATGAGAT
TCTACCACTCTGGAAAATTTATGCCTGCGGGCTTGATTGCAGGTGCCAGTTTGCTGATGG
TCGCCAAACTTGGAATTAGTGTGTTGAGTAAACCCCATCCGTAGTAGTCACGGCCCCGCT
TGGACTCATGAAGAATTGTTAACCTTCCCACTATTTCTTGTGCATTAATACGTGCAGCGT
CTTCACATATTCTGAAACCTTAAAACCCAAAACAACACTGAACTTTGCAGAGAAAAAAAA
TCAGTCATTATGGTTCCGACTCTAAAGAGGTGGGTGTGTGTAACACAAGATCTTTCTCTC
GTCGTGTCCTCGTTCAGCTTGATTCTTTTTATTGGTCTCCTCTCTTCTTTCTGTACCTAT
AGGTAAAATCTCAAAGTAAAAAAGTTAGGTGTCACCACTGGGGCCCCTGAAACCCCCTGC
CCTACTCAGGACCAGTGTGAAAGAAACCTTTTAATGAGAATTAGGGTATCAGTTCTTTAG
CTCATCTTAGAGCACAGACCTGCTTTGAAATTATGTTCAATGAAATCAATGAAAATAAAG
TTTTCTGTTTATTATTAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q543H6_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q543H6_MOUSE

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

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               142-555, gnl|bosTau2|chr22 (12517268-12516861)
               

               
               142-555, gnl|Hg17|chr20 (41585604-41585195)
               

               
               142-555, gnl|Mm7|chr17 (34343388-34342966)
               


               
               573-923, gnl|bosTau2|chr22 (12514935-12514587)
               

               
               573-923, gnl|Hg17|chr20 (41584514-41583906)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               142-555, gnl|bosTau2|chr22 (12517268-12516861)
               

               
               142-555, gnl|Hg17|chr20 (41585604-41585195)
               

               
               142-555, gnl|Mm7|chr17 (34343388-34342966)
               


               
               573-923, gnl|bosTau2|chr22 (12514935-12514587)
               

               
               573-923, gnl|Hg17|chr20 (41584514-41583906)

Expressed library(ies): 73 entry(ies)

More info

Expressed library(ies): 73 entry(ies)

Help | Less info


               
               hea (1.22699)
               

               
               ste (1.08167)
               

               
               sin (0.874738)
               

               
               ssp (0.813118)
               

               
               sug (0.763747)
               

               
               lun (0.752445)
               

               
               cbe (0.717703)
               

               
               vin (0.665115)
               

               
               ova (0.645661)
               

               
               mas (0.630915)
               

               
               tra (0.61546)
               

               
               eli (0.607257)
               

               
               cly (0.603209)
               

               
               ski (0.586941)
               

               
               pty (0.570858)
               

               
               lyg (0.532411)
               

               
               nmm (0.531209)
               

               
               cut (0.509771)
               

               
               cki (0.495704)
               

               
               nco (0.485201)
               

               
               ldo (0.485013)
               

               
               csp (0.483559)
               

               
               mga (0.480615)
               

               
               cli (0.458435)
               

               
               lin (0.436808)
               

               
               spl (0.429553)
               

               
               amn (0.417711)
               

               
               che (0.408942)
               

               
               pla (0.401016)
               

               
               nbm (0.397298)
               

               
               cov (0.396458)
               

               
               nep (0.36785)
               

               
               pgl (0.35545)
               

               
               nje (0.33184)
               

               
               sme (0.305437)
               

               
               bfe (0.299715)
               

               
               cst (0.280073)
               

               
               fce (0.271592)
               

               
               bla (0.248694)
               

               
               eep (0.245128)
               

               
               mgp (0.230681)
               

               
               spc (0.226732)
               

               
               cty (0.20816)
               

               
               tes (0.207814)
               

               
               jej (0.197844)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               sto (0.179824)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               cag (0.151194)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

Expressed library(ies): 73 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (1.22699)
               

               
               ste (1.08167)
               

               
               sin (0.874738)
               

               
               ssp (0.813118)
               

               
               sug (0.763747)
               

               
               lun (0.752445)
               

               
               cbe (0.717703)
               

               
               vin (0.665115)
               

               
               ova (0.645661)
               

               
               mas (0.630915)
               

               
               tra (0.61546)
               

               
               eli (0.607257)
               

               
               cly (0.603209)
               

               
               ski (0.586941)
               

               
               pty (0.570858)
               

               
               lyg (0.532411)
               

               
               nmm (0.531209)
               

               
               cut (0.509771)
               

               
               cki (0.495704)
               

               
               nco (0.485201)
               

               
               ldo (0.485013)
               

               
               csp (0.483559)
               

               
               mga (0.480615)
               

               
               cli (0.458435)
               

               
               lin (0.436808)
               

               
               spl (0.429553)
               

               
               amn (0.417711)
               

               
               che (0.408942)
               

               
               pla (0.401016)
               

               
               nbm (0.397298)
               

               
               cov (0.396458)
               

               
               nep (0.36785)
               

               
               pgl (0.35545)
               

               
               nje (0.33184)
               

               
               sme (0.305437)
               

               
               bfe (0.299715)
               

               
               cst (0.280073)
               

               
               fce (0.271592)
               

               
               bla (0.248694)
               

               
               eep (0.245128)
               

               
               mgp (0.230681)
               

               
               spc (0.226732)
               

               
               cty (0.20816)
               

               
               tes (0.207814)
               

               
               jej (0.197844)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               sto (0.179824)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               cag (0.151194)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

	142-555, gnl\|bosTau2\|chr22 (12517268-12516861)
	142-555, gnl\|Hg17\|chr20 (41585604-41585195)
	142-555, gnl\|Mm7\|chr17 (34343388-34342966)

	573-923, gnl\|bosTau2\|chr22 (12514935-12514587)
	573-923, gnl\|Hg17\|chr20 (41584514-41583906)

	hea (1.22699)
	ste (1.08167)
	sin (0.874738)
	ssp (0.813118)
	sug (0.763747)
	lun (0.752445)
	cbe (0.717703)
	vin (0.665115)
	ova (0.645661)
	mas (0.630915)
	tra (0.61546)
	eli (0.607257)
	cly (0.603209)
	ski (0.586941)
	pty (0.570858)
	lyg (0.532411)
	nmm (0.531209)
	cut (0.509771)
	cki (0.495704)
	nco (0.485201)
	ldo (0.485013)
	csp (0.483559)
	mga (0.480615)
	cli (0.458435)
	lin (0.436808)
	spl (0.429553)
	amn (0.417711)
	che (0.408942)
	pla (0.401016)
	nbm (0.397298)
	cov (0.396458)
	nep (0.36785)
	pgl (0.35545)
	nje (0.33184)
	sme (0.305437)
	bfe (0.299715)
	cst (0.280073)
	fce (0.271592)
	bla (0.248694)
	eep (0.245128)
	mgp (0.230681)
	spc (0.226732)
	cty (0.20816)
	tes (0.207814)
	jej (0.197844)
	fcc (0.197785)
	col (0.195008)
	nlu (0.191681)
	cmu (0.186393)
	sag (0.182715)
	mgm (0.180343)
	sto (0.179824)
	fbs (0.175346)
	rec (0.17307)
	duo (0.172801)
	mcp (0.170648)
	eye (0.170503)
	fhi (0.169578)
	cag (0.151194)
	isp (0.150376)
	fat (0.147427)
	liv (0.146284)
	hyp (0.142837)
	csk (0.140746)
	hlv (0.139256)
	kid (0.129735)
	ret (0.128733)
	thg (0.126791)
	ese (0.126502)
	eru (0.120048)
	ebs (0.118301)
	jca (0.11396)
	eje (0.0988338)