Ss1.1-Pig3-SRG8011D02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAAAGGCTTTTACTCTAGGCCTCTCGGTTTGCGCGGGCGGGCCAGCCTGCCGCGGGGAGG GTGAGAGTTCTTGCGGCCGCTCACGGGAGGAATTTTCACAAGATGTATTTGACATAGAAC TGTCTGAGTGGTGTCCCCCCAGGCCTACAGTACCCTGGGGGGCTCTTGTTGAATGAAGAC TCTCCTGCAGATGGAGGAACTGGAGCAAGGCCTGCTGATGCAGCCGTGGGCATGGCTACA GCTTTCTGAGAACTCCCTCTTGGCTAAGGCTTATATCACCCAGCAGGGCTATGCCTTGCT GGTTTCAGATCTTCAGCAGGTATGGCATGAACAGGTGGACACTAGCGTGGTCAGCCAGAG AGCAAAGGAGCTGAACAAGCGCCTGACTGCTCCTCCTGCAGCTTTTCTCTGTCGCCTGGA TGAGCTGCTTCGCCCGTTGTTGAAGGACACTGCTTGCCCTGGCAAAGCTACATTCTCCTG TGACCGTGTGGCAGAAACACTGATACTGCGGGTGCGGAGTGAGCTCTCCGGTCTCCCATT CTATTGGAATTTCCACTGCACCCTAGCTACCCCATCACTGGTCACCCAACATTTGATTCG TCCTCTGATGGGCATGAGTCTGGCGTTGCAGTGCCAAGTGAGGGAGCTAGCAACATTGCT TCGTATGAAAGACCTAGAGATCCAGGACTACCAGGAGAGTGGGGCCCTGCTGAGCCGAGA TCGGTTGAAGACAGAGCCATTTGAAGAGAAGTCCTTCTTGGAACAGTTTATGGTAGAGAA ACTACCAGAGGCATGCAGTGTTGGTGATGGAAGACCTTTTGTCACAAATCTACAGAGTCT GTATATGGCAGTCACCAGACAAGAGATCCTAGTGGGACAGGAGCATCAAGGCACAGGAGA TCCCCAGACCTCAAGCAGTACCTCCTCCCAGGATGCCAATGGCCAGCTTCTGAACCAGCC AGAGGAGCCAGTCTCCTCAGCACCATCCCTCCCAGTGCCTGAGAAGGAGCCCACAGTTAC TTCAGGACCCATGCAGAGACCTCAGCTGTTGAAGGCCAAGAGGAAGAAGCTAAGGGGACT CTTCAGCTAACCTGTCATTGTCTCAACTCCTAAGAATGGATTTGGAGAGTAGTCTCCTAG TGTCACCTTGAAAGGAGCACCCGTGGCAGCAACATCTCTGACACAGAGTTATACAGTTAG GGACCCCACTGTAAGGGCAAGATAACTGAAGTTCATGTTGGCAGGCATGGGTACTGTCAA CTGAGGGAATGCTGGCTCCAACACATCAGGCACTGGCCTTCCCTGTCAGAGTGGAAGCCA GTCTCTGGGAACCCTATACCCTCCTCTCTTTTGCTGGAGGTTCTCTAGACCCAGGATCTA CCATGGACTTTTAGGTATATGGGGCAGGTCAGCAAAAAGGCACAACATGCTTTGGAAGCC TTGTCTACTTTTCTTGAGAGTCCCTAGCCAGTCCCAGATGCTTCTCCAAGACCCTTTTCT CTCTTGAGCATGAAATACAAAGCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAAAGGCTTTTACTCTAGGCCTCTCGGTTTGCGCGGGCGGGCCAGCCTGCCGCGGGGAGG GTGAGAGTTCTTGCGGCCGCTCACGGGAGGAATTTTCACAAGATGTATTTGACATAGAAC TGTCTGAGTGGTGTCCCCCCAGGCCTACAGTACCCTGGGGGGCTCTTGTTGAATGAAGAC TCTCCTGCAGATGGAGGAACTGGAGCAAGGCCTGCTGATGCAGCCGTGGGCATGGCTACA GCTTTCTGAGAACTCCCTCTTGGCTAAGGCTTATATCACCCAGCAGGGCTATGCCTTGCT GGTTTCAGATCTTCAGCAGGTATGGCATGAACAGGTGGACACTAGCGTGGTCAGCCAGAG AGCAAAGGAGCTGAACAAGCGCCTGACTGCTCCTCCTGCAGCTTTTCTCTGTCGCCTGGA TGAGCTGCTTCGCCCGTTGTTGAAGGACACTGCTTGCCCTGGCAAAGCTACATTCTCCTG TGACCGTGTGGCAGAAACACTGATACTGCGGGTGCGGAGTGAGCTCTCCGGTCTCCCATT CTATTGGAATTTCCACTGCACCCTAGCTACCCCATCACTGGTCACCCAACATTTGATTCG TCCTCTGATGGGCATGAGTCTGGCGTTGCAGTGCCAAGTGAGGGAGCTAGCAACATTGCT TCGTATGAAAGACCTAGAGATCCAGGACTACCAGGAGAGTGGGGCCCTGCTGAGCCGAGA TCGGTTGAAGACAGAGCCATTTGAAGAGAAGTCCTTCTTGGAACAGTTTATGGTAGAGAA ACTACCAGAGGCATGCAGTGTTGGTGATGGAAGACCTTTTGTCACAAATCTACAGAGTCT GTATATGGCAGTCACCAGACAAGAGATCCTAGTGGGACAGGAGCATCAAGGCACAGGAGA TCCCCAGACCTCAAGCAGTACCTCCTCCCAGGATGCCAATGGCCAGCTTCTGAACCAGCC AGAGGAGCCAGTCTCCTCAGCACCATCCCTCCCAGTGCCTGAGAAGGAGCCCACAGTTAC TTCAGGACCCATGCAGAGACCTCAGCTGTTGAAGGCCAAGAGGAAGAAGCTAAGGGGACT CTTCAGCTAACCTGTCATTGTCTCAACTCCTAAGAATGGATTTGGAGAGTAGTCTCCTAG TGTCACCTTGAAAGGAGCACCCGTGGCAGCAACATCTCTGACACAGAGTTATACAGTTAG GGACCCCACTGTAAGGGCAAGATAACTGAAGTTCATGTTGGCAGGCATGGGTACTGTCAA CTGAGGGAATGCTGGCTCCAACACATCAGGCACTGGCCTTCCCTGTCAGAGTGGAAGCCA GTCTCTGGGAACCCTATACCCTCCTCTCTTTTGCTGGAGGTTCTCTAGACCCAGGATCTA CCATGGACTTTTAGGTATATGGGGCAGGTCAGCAAAAAGGCACAACATGCTTTGGAAGCC TTGTCTACTTTTCTTGAGAGTCCCTAGCCAGTCCCAGATGCTTCTCCAAGACCCTTTTCT CTCTTGAGCATGAAATACAAAGCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 165-1402, - strand, RNAz p=0.906117 | |
| 205-1378, - strand, RNAz p=0.954734 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 165-1402, - strand, RNAz p=0.906117 | |
| 205-1378, - strand, RNAz p=0.954734 |
| Aligned organism(s): 54 entry(ies) | More info |
| Aligned organism(s): 54 entry(ies) | Help | Less info |
| 87-368, gnl|bosTau2|chr2 (65102203-65101928) | |
| 87-368, gnl|canFam2|chr37 (28714693-28714902) | |
| 87-368, gnl|dasNov1|scaffold_4192 (66006-65800) | |
| 87-368, gnl|echTel1|scaffold_308242 (48482-48692) | |
| 87-368, gnl|galGal2|chr7 (23041667-23041456) | |
| 87-368, gnl|hg17|chr2 (219848395-219848605) | |
| 87-368, gnl|Hg17|chr2 (219848693-219848412) | |
| 87-368, gnl|loxAfr1|scaffold_145 (22148-22358) | |
| 87-368, gnl|monDom2|scaffold_39 (1393640-1393426) | |
| 87-368, gnl|oryCun1|scaffold_121301 (9165-9375) | |
| 87-368, gnl|panTro1|chr13 (110011398-110011608) | |
| 87-368, gnl|rheMac2|chr12 (83014854-83015064) | |
| 87-368, gnl|rn3|chr9 (74550445-74550663) | |
| 87-368, gnl|xenTro1|scaffold_31 (2230342-2230547) | |
| 580-719, gnl|bosTau2|chr2 (65093353-65093214) | |
| 580-719, gnl|canFam2|chr37 (28706448-28706604) | |
| 580-719, gnl|dasNov1|scaffold_16770 (43344-43188) | |
| 580-719, gnl|echTel1|scaffold_308242 (39764-39904) | |
| 580-719, gnl|galGal2|chr7 (23042985-23042835) | |
| 580-719, gnl|hg17|chr2 (219837882-219838038) | |
| 580-719, gnl|Hg17|chr2 (219838023-219837884) | |
| 580-719, gnl|mm7|chr1 (75286179-75286337) | |
| 580-719, gnl|Mm7|chr1 (75286320-75286181) | |
| 580-719, gnl|monDom2|scaffold_39 (1439356-1439200) | |
| 580-719, gnl|oryCun1|scaffold_111342 (4524-4363) | |
| 580-719, gnl|panTro1|chr13 (110000890-110001046) | |
| 580-719, gnl|rheMac2|chr12 (83003742-83003898) | |
| 580-719, gnl|rn3|chr9 (74540521-74540679) | |
| 580-719, gnl|tetNig1|chr3 (1488938-1488783) | |
| 777-897, gnl|bosTau2|chr2 (65016066-65015946) | |
| 777-897, gnl|canFam2|chr37 (28638341-28638592) | |
| 777-897, gnl|dasNov1|scaffold_12464 (46013-45750) | |
| 777-897, gnl|hg17|chr2 (219768292-219768565) | |
| 777-897, gnl|Hg17|chr2 (219768435-219768315) | |
| 777-897, gnl|loxAfr1|scaffold_20188 (30612-30868) | |
| 777-897, gnl|mm7|chr1 (75208460-75208724) | |
| 777-897, gnl|Mm7|chr1 (75208594-75208474) | |
| 777-897, gnl|monDom2|scaffold_39 (1524353-1524053) | |
| 777-897, gnl|oryCun1|scaffold_206302 (41412-41142) | |
| 777-897, gnl|panTro1|chr13 (109931376-109931649) | |
| 777-897, gnl|rheMac2|chr12 (82932233-82932502) | |
| 777-897, gnl|rn3|chr9 (74457604-74457874) | |
| 1020-1523, gnl|bosTau2|chr2 (65014279-65013786) | |
| 1020-1523, gnl|canFam2|chr37 (28636742-28637160) | |
| 1020-1523, gnl|dasNov1|scaffold_12464 (48037-47607) | |
| 1020-1523, gnl|hg17|chr2 (219766211-219766594) | |
| 1020-1523, gnl|Hg17|chr2 (219766678-219766210) | |
| 1020-1523, gnl|loxAfr1|scaffold_20188 (28935-29366) | |
| 1020-1523, gnl|mm7|chr1 (75207047-75207361) | |
| 1020-1523, gnl|monDom2|scaffold_39 (1526103-1525611) | |
| 1020-1523, gnl|oryCun1|scaffold_206302 (43986-43628) | |
| 1020-1523, gnl|panTro1|chr13 (109929304-109929687) | |
| 1020-1523, gnl|rheMac2|chr12 (82930162-82930544) | |
| 1020-1523, gnl|rn3|chr9 (74456150-74456514) |
| Aligned organism(s): 54 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 87-368, gnl|bosTau2|chr2 (65102203-65101928) | |
| 87-368, gnl|canFam2|chr37 (28714693-28714902) | |
| 87-368, gnl|dasNov1|scaffold_4192 (66006-65800) | |
| 87-368, gnl|echTel1|scaffold_308242 (48482-48692) | |
| 87-368, gnl|galGal2|chr7 (23041667-23041456) | |
| 87-368, gnl|hg17|chr2 (219848395-219848605) | |
| 87-368, gnl|Hg17|chr2 (219848693-219848412) | |
| 87-368, gnl|loxAfr1|scaffold_145 (22148-22358) | |
| 87-368, gnl|monDom2|scaffold_39 (1393640-1393426) | |
| 87-368, gnl|oryCun1|scaffold_121301 (9165-9375) | |
| 87-368, gnl|panTro1|chr13 (110011398-110011608) | |
| 87-368, gnl|rheMac2|chr12 (83014854-83015064) | |
| 87-368, gnl|rn3|chr9 (74550445-74550663) | |
| 87-368, gnl|xenTro1|scaffold_31 (2230342-2230547) | |
| 580-719, gnl|bosTau2|chr2 (65093353-65093214) | |
| 580-719, gnl|canFam2|chr37 (28706448-28706604) | |
| 580-719, gnl|dasNov1|scaffold_16770 (43344-43188) | |
| 580-719, gnl|echTel1|scaffold_308242 (39764-39904) | |
| 580-719, gnl|galGal2|chr7 (23042985-23042835) | |
| 580-719, gnl|hg17|chr2 (219837882-219838038) | |
| 580-719, gnl|Hg17|chr2 (219838023-219837884) | |
| 580-719, gnl|mm7|chr1 (75286179-75286337) | |
| 580-719, gnl|Mm7|chr1 (75286320-75286181) | |
| 580-719, gnl|monDom2|scaffold_39 (1439356-1439200) | |
| 580-719, gnl|oryCun1|scaffold_111342 (4524-4363) | |
| 580-719, gnl|panTro1|chr13 (110000890-110001046) | |
| 580-719, gnl|rheMac2|chr12 (83003742-83003898) | |
| 580-719, gnl|rn3|chr9 (74540521-74540679) | |
| 580-719, gnl|tetNig1|chr3 (1488938-1488783) | |
| 777-897, gnl|bosTau2|chr2 (65016066-65015946) | |
| 777-897, gnl|canFam2|chr37 (28638341-28638592) | |
| 777-897, gnl|dasNov1|scaffold_12464 (46013-45750) | |
| 777-897, gnl|hg17|chr2 (219768292-219768565) | |
| 777-897, gnl|Hg17|chr2 (219768435-219768315) | |
| 777-897, gnl|loxAfr1|scaffold_20188 (30612-30868) | |
| 777-897, gnl|mm7|chr1 (75208460-75208724) | |
| 777-897, gnl|Mm7|chr1 (75208594-75208474) | |
| 777-897, gnl|monDom2|scaffold_39 (1524353-1524053) | |
| 777-897, gnl|oryCun1|scaffold_206302 (41412-41142) | |
| 777-897, gnl|panTro1|chr13 (109931376-109931649) | |
| 777-897, gnl|rheMac2|chr12 (82932233-82932502) | |
| 777-897, gnl|rn3|chr9 (74457604-74457874) | |
| 1020-1523, gnl|bosTau2|chr2 (65014279-65013786) | |
| 1020-1523, gnl|canFam2|chr37 (28636742-28637160) | |
| 1020-1523, gnl|dasNov1|scaffold_12464 (48037-47607) | |
| 1020-1523, gnl|hg17|chr2 (219766211-219766594) | |
| 1020-1523, gnl|Hg17|chr2 (219766678-219766210) | |
| 1020-1523, gnl|loxAfr1|scaffold_20188 (28935-29366) | |
| 1020-1523, gnl|mm7|chr1 (75207047-75207361) | |
| 1020-1523, gnl|monDom2|scaffold_39 (1526103-1525611) | |
| 1020-1523, gnl|oryCun1|scaffold_206302 (43986-43628) | |
| 1020-1523, gnl|panTro1|chr13 (109929304-109929687) | |
| 1020-1523, gnl|rheMac2|chr12 (82930162-82930544) | |
| 1020-1523, gnl|rn3|chr9 (74456150-74456514) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| mas (0.210305) | |
| cty (0.20816) | |
| sin (0.174948) | |
| fhi (0.169578) | |
| tbr (0.154178) | |
| med (0.116252) | |
| jej (0.0989218) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mas (0.210305) | |
| cty (0.20816) | |
| sin (0.174948) | |
| fhi (0.169578) | |
| tbr (0.154178) | |
| med (0.116252) | |
| jej (0.0989218) |