Non-Coding RNA Search

Ss1.1-Pig3-SRG8011D06.3

Sequence:


               
               CCTCTGACCGACGTCTGGAGAGGAAGTGGGGAAGTGGCGAAATCTTCCCCGCTCCATGAT
CCGGCTTCTGCCCGTCACTTCCCAATTTCCGCTCGGTACCAGGCCCAGGAGACCAGTGGA
AGGCGCGCCCCCGGTACCCTCCCAAGTCTCTCAGGCGCGTCCCCGGCCCCGCAGCTCGGC
TCACAGTGGCCGCCGCACCCACCCAGAGCCGCTTCCTCCCATTTGGTTAATGGTGCCTGG
ACCGCAAGGGAGGAGGGAGTCTCTACCCAACGCGCCCCCAACACCTCCGGCCATCTCCCC
ACCGCCAACCGCTCAGTGACCGACCCCCGGGAAAGGGGCGTGGCTAATAAGCAGAGTGCC
CCGAGCGCGCCCGCGCCCCCCCCGCCTCAGCGTTACCTTTCACCACGTCACACTCGATGA
CGCGTCCGCGGCGCTCGAAGAGGATGCGCAATTCATGGATCGTGCACGCAGCCGACACAT
TGCCCACGAATATCTTCCAAGTGTTAAGAGGCCGTGGGCGCGACATATCCACTACGAGCG
CGCGCCCCGGCCGCAGATCGTGGCCGTGCAGGGCCTCGATGGCGCGCAGCGCGCCCGCGT
TCTCGCGCATGTGCACGAAGGCGAACTGTTTCATGACGGCGCAGATCATGACCGTGCCGT
AGGGCGCGAAGAGAGCTGCCAGCTCCTCCGGCGTCGTATCCGCCCCATCGACGTTTCCCA
CGAATATCTTCATTTTGCCGCCGCAGCTGCCCTCCCGGAGAGCCGGGACCTCTCCTCCAG
CGACTGGCGAGACGTCCGACCCGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTCTGACCGACGTCTGGAGAGGAAGTGGGGAAGTGGCGAAATCTTCCCCGCTCCATGAT
CCGGCTTCTGCCCGTCACTTCCCAATTTCCGCTCGGTACCAGGCCCAGGAGACCAGTGGA
AGGCGCGCCCCCGGTACCCTCCCAAGTCTCTCAGGCGCGTCCCCGGCCCCGCAGCTCGGC
TCACAGTGGCCGCCGCACCCACCCAGAGCCGCTTCCTCCCATTTGGTTAATGGTGCCTGG
ACCGCAAGGGAGGAGGGAGTCTCTACCCAACGCGCCCCCAACACCTCCGGCCATCTCCCC
ACCGCCAACCGCTCAGTGACCGACCCCCGGGAAAGGGGCGTGGCTAATAAGCAGAGTGCC
CCGAGCGCGCCCGCGCCCCCCCCGCCTCAGCGTTACCTTTCACCACGTCACACTCGATGA
CGCGTCCGCGGCGCTCGAAGAGGATGCGCAATTCATGGATCGTGCACGCAGCCGACACAT
TGCCCACGAATATCTTCCAAGTGTTAAGAGGCCGTGGGCGCGACATATCCACTACGAGCG
CGCGCCCCGGCCGCAGATCGTGGCCGTGCAGGGCCTCGATGGCGCGCAGCGCGCCCGCGT
TCTCGCGCATGTGCACGAAGGCGAACTGTTTCATGACGGCGCAGATCATGACCGTGCCGT
AGGGCGCGAAGAGAGCTGCCAGCTCCTCCGGCGTCGTATCCGCCCCATCGACGTTTCCCA
CGAATATCTTCATTTTGCCGCCGCAGCTGCCCTCCCGGAGAGCCGGGACCTCTCCTCCAG
CGACTGGCGAGACGTCCGACCCGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|34861417|ref|XP_341987.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|34861417|ref|XP_341987.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               486-605, - strand, RNAz p=0.90092

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               486-605, - strand, RNAz p=0.90092

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-804, gnl|bosTau2|chr29 (36882271-36883086)
               

               
               2-804, gnl|Hg17|chr11 (66141516-66140697)
               

               
               2-804, gnl|Mm7|chr19 (4705562-4706385)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-804, gnl|bosTau2|chr29 (36882271-36883086)
               

               
               2-804, gnl|Hg17|chr11 (66141516-66140697)
               

               
               2-804, gnl|Mm7|chr19 (4705562-4706385)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               tes (0.207814)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)

	2-804, gnl\|bosTau2\|chr29 (36882271-36883086)
	2-804, gnl\|Hg17\|chr11 (66141516-66140697)
	2-804, gnl\|Mm7\|chr19 (4705562-4706385)