Non-Coding RNA Search

Ss1.1-Pig3-SRG8011D09.3

Sequence:


               
               ATTTCCTTCATTCTAGTTGGAATAATCATCGTCACATCAATCAGAGGATTGTTGATCACT
CTTACCAAGTTCTTTTATGCCATCTCCAGCAGTAAGTCCTCCAATGTCATTGTCCTGCTA
TTAGCACAGATAATGGGCATGTATTTCGTCTCCTCGGTGCTACTGATCCGAATGAGCATG
CCCCTGGAGTACCGCACCATAGTCACCGAAGTCCTTGGAGAGCTGCAGTTCAACTTCTAT
CACCGTTGGTTTGATGTGATCTTCCTGGTCAGTGCTCTTTCCAGCATACTTTTCCTCTAT
TTGGCTCACAAACAGGCACCAGAGAAGCATATGGCACCTTGAACTCATGCCTATTACAGA
CTGCTGCAGGCCACTGATGCCAGAATTTGGATATAAGAGGGAAAAAATGGAGGGGGGACC
AGGACTTAATATTTTTTAAACAATATGCTGTGGTAGCATATCTTACCTCCAGTTTACGCC
TTCCTCCTCAGATGATACTGTGATCATGAGTAGCATCAGCTGGAAATGAGAAAGAGGAGT
AACTCAAGCTAGTCCTCAGCCAACCTGTTTGGGTCGGAGGCTGGTGCAGCATGCTGGGTG
GTAGGAGTGGAAAAGAGCAGAGAAACTAAAGGGAAAAAATACACTGGAACTCTAGGGTAA
GAGACATGTCAGGTAGCTGGGCCAGAAACATAGGGTTTCTGTTTAAGTCAAGGATCACAT
GGAGAAGGTTATGACTTTCCCTTGAGATTGATTATCATTAAAATCAGAGGTTGTAATACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTCCTTCATTCTAGTTGGAATAATCATCGTCACATCAATCAGAGGATTGTTGATCACT
CTTACCAAGTTCTTTTATGCCATCTCCAGCAGTAAGTCCTCCAATGTCATTGTCCTGCTA
TTAGCACAGATAATGGGCATGTATTTCGTCTCCTCGGTGCTACTGATCCGAATGAGCATG
CCCCTGGAGTACCGCACCATAGTCACCGAAGTCCTTGGAGAGCTGCAGTTCAACTTCTAT
CACCGTTGGTTTGATGTGATCTTCCTGGTCAGTGCTCTTTCCAGCATACTTTTCCTCTAT
TTGGCTCACAAACAGGCACCAGAGAAGCATATGGCACCTTGAACTCATGCCTATTACAGA
CTGCTGCAGGCCACTGATGCCAGAATTTGGATATAAGAGGGAAAAAATGGAGGGGGGACC
AGGACTTAATATTTTTTAAACAATATGCTGTGGTAGCATATCTTACCTCCAGTTTACGCC
TTCCTCCTCAGATGATACTGTGATCATGAGTAGCATCAGCTGGAAATGAGAAAGAGGAGT
AACTCAAGCTAGTCCTCAGCCAACCTGTTTGGGTCGGAGGCTGGTGCAGCATGCTGGGTG
GTAGGAGTGGAAAAGAGCAGAGAAACTAAAGGGAAAAAATACACTGGAACTCTAGGGTAA
GAGACATGTCAGGTAGCTGGGCCAGAAACATAGGGTTTCTGTTTAAGTCAAGGATCACAT
GGAGAAGGTTATGACTTTCCCTTGAGATTGATTATCATTAAAATCAGAGGTTGTAATACT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61813415|ref|XP_590192.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61813415|ref|XP_590192.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               489-596, + strand, RNAz p=0.897653

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               489-596, + strand, RNAz p=0.897653

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of CR590313, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of CR590313, +

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               135-780, gnl|bosTau2|chr3 (15714540-15713886)
               

               
               135-780, gnl|Hg17|chr1 (143254270-143253637)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               135-780, gnl|bosTau2|chr3 (15714540-15713886)
               

               
               135-780, gnl|Hg17|chr1 (143254270-143253637)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               cte (0.29274)
               

               
               nlu (0.191681)
               

               
               sto (0.179824)
               

               
               fty (0.17584)
               

               
               rec (0.17307)
               

               
               cje (0.165235)
               

               
               cki (0.165235)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               csk (0.140746)

Expressed library(ies): 10 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)
               

               
               nlu (0.191681)
               

               
               sto (0.179824)
               

               
               fty (0.17584)
               

               
               rec (0.17307)
               

               
               cje (0.165235)
               

               
               cki (0.165235)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               csk (0.140746)

	135-780, gnl\|bosTau2\|chr3 (15714540-15713886)
	135-780, gnl\|Hg17\|chr1 (143254270-143253637)

	cte (0.29274)
	nlu (0.191681)
	sto (0.179824)
	fty (0.17584)
	rec (0.17307)
	cje (0.165235)
	cki (0.165235)
	fco (0.157208)
	tbr (0.154178)
	csk (0.140746)