Non-Coding RNA Search

Ss1.1-Pig3-SRG8011D13.3

Sequence:


               
               TCCAGAAACAGGCTTAACAAGGTTACGAATGATATGCCCAAGTGCATCTAGCCACTAGGA
GGGAAAGTAAGCCATCACTGCCTCTGTAAAGCAGCAGCAGGAATCGGCTGTGAATTGCTA
GCAATTACTGTTTTAAAAGTTTTGCTTTTTTAGCAATTGCTTTTTGGTTTGCTTGTTCCT
CAAACTTAAGGGCAAGGGGCATACATCTTCCCCAGACACAGACTGGAATCTGCAGCTTCT
GTGGTGCCACACACTGTATAGCTCTTTATTCACAGAGTAGAGGAACTTTCAGAAACCAAG
TGGTCTGAGCTACTACTGCCCACCCCTGGCTTTCTAGGGTAGAAAATTCATGGTATGAAT
AAATTCAAAGGGTACTTGGAACTGTGGGTTAACAAGAAAGGCAGCATAATTAATGCATGC
TAACAGATCTGCAACCAGAACAGCCACCAAGCATGACTTGTCTATGGTTTATGTTGCGTT
CCAGTGTGTCCAAAGCTGAGGCACCCTGTCTTTTGAAAATATGCACTGCATAGCTTCTAT
TTATGGGGACCTGTGACTACAGAGCTGGCTCCTGAGTTGGGAAGGAAAGGGAAAGATGCA
GCTGAAAGTGACAAGAGGTGATGATGTGGTGGGAATAAGGTAGAGTTAAGGGAAAAAAGA
GTATGTGGTTCAGAGAGGCTGAGGAGGACTGGGGCTGCAAGGACACTTTCATTGGGAGCC
AGAGTGCTTAAGCTCTCCTGGGGGTGGGGATGCACCATGCTCCCAAGAGTCAGGGCCAAA
GCCACTGATTTTTTTATATGTGACAGTCACTGCACTGCTCAGCCACCAGCCAGTGGGATA
TTTTTTTAGAAAAAAACTCCCCCCCTTGCAATCATAATTAATGCATATTAAGGAAAAATC
TGGGAATATTACAAAGAATCAGTTTGCCACCCAAATGTTACCACTGTTAACCTTTTGGTG
TTAAATGTTCCTCTAGACATTTCTGTGCATAGATTTTTGGTGTGTTTACATAGTTGTTAT
TCTACTGTATATACAATTTTATGTCCCTTTTGTACTTAACATATAAACGTTTTTTCCACG
TTATCTGTCTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCAGAAACAGGCTTAACAAGGTTACGAATGATATGCCCAAGTGCATCTAGCCACTAGGA
GGGAAAGTAAGCCATCACTGCCTCTGTAAAGCAGCAGCAGGAATCGGCTGTGAATTGCTA
GCAATTACTGTTTTAAAAGTTTTGCTTTTTTAGCAATTGCTTTTTGGTTTGCTTGTTCCT
CAAACTTAAGGGCAAGGGGCATACATCTTCCCCAGACACAGACTGGAATCTGCAGCTTCT
GTGGTGCCACACACTGTATAGCTCTTTATTCACAGAGTAGAGGAACTTTCAGAAACCAAG
TGGTCTGAGCTACTACTGCCCACCCCTGGCTTTCTAGGGTAGAAAATTCATGGTATGAAT
AAATTCAAAGGGTACTTGGAACTGTGGGTTAACAAGAAAGGCAGCATAATTAATGCATGC
TAACAGATCTGCAACCAGAACAGCCACCAAGCATGACTTGTCTATGGTTTATGTTGCGTT
CCAGTGTGTCCAAAGCTGAGGCACCCTGTCTTTTGAAAATATGCACTGCATAGCTTCTAT
TTATGGGGACCTGTGACTACAGAGCTGGCTCCTGAGTTGGGAAGGAAAGGGAAAGATGCA
GCTGAAAGTGACAAGAGGTGATGATGTGGTGGGAATAAGGTAGAGTTAAGGGAAAAAAGA
GTATGTGGTTCAGAGAGGCTGAGGAGGACTGGGGCTGCAAGGACACTTTCATTGGGAGCC
AGAGTGCTTAAGCTCTCCTGGGGGTGGGGATGCACCATGCTCCCAAGAGTCAGGGCCAAA
GCCACTGATTTTTTTATATGTGACAGTCACTGCACTGCTCAGCCACCAGCCAGTGGGATA
TTTTTTTAGAAAAAAACTCCCCCCCTTGCAATCATAATTAATGCATATTAAGGAAAAATC
TGGGAATATTACAAAGAATCAGTTTGCCACCCAAATGTTACCACTGTTAACCTTTTGGTG
TTAAATGTTCCTCTAGACATTTCTGTGCATAGATTTTTGGTGTGTTTACATAGTTGTTAT
TCTACTGTATATACAATTTTATGTCCCTTTTGTACTTAACATATAAACGTTTTTTCCACG
TTATCTGTCTTA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               2-1092, gnl|bosTau2|chr22 (36826453-36825365)
               

               
               2-1092, gnl|Hg17|chr3 (52264797-52263497)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-1092, gnl|bosTau2|chr22 (36826453-36825365)
               

               
               2-1092, gnl|Hg17|chr3 (52264797-52263497)

Expressed library(ies): 17 entry(ies)

More info

Expressed library(ies): 17 entry(ies)

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               pro (0.512033)
               

               
               che (0.272628)
               

               
               fce (0.271592)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               col (0.195008)
               

               
               sto (0.179824)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               cje (0.165235)
               

               
               spl (0.143184)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               bla (0.124347)
               

               
               med (0.116252)
               

               
               ecc (0.115035)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               che (0.272628)
               

               
               fce (0.271592)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               col (0.195008)
               

               
               sto (0.179824)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               cje (0.165235)
               

               
               spl (0.143184)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               bla (0.124347)
               

               
               med (0.116252)
               

               
               ecc (0.115035)

	2-1092, gnl\|bosTau2\|chr22 (36826453-36825365)
	2-1092, gnl\|Hg17\|chr3 (52264797-52263497)

	pro (0.512033)
	che (0.272628)
	fce (0.271592)
	tes (0.207814)
	hea (0.204499)
	col (0.195008)
	sto (0.179824)
	fbs (0.175346)
	duo (0.172801)
	eye (0.170503)
	cje (0.165235)
	spl (0.143184)
	lyg (0.133103)
	ova (0.129132)
	bla (0.124347)
	med (0.116252)
	ecc (0.115035)