Non-Coding RNA Search

Ss1.1-Pig3-SRG8011F05.3

Sequence:


               
               TCATTTTAAGATCCAGTAGGCTAGGCACCCTCCTAAAATATACAGAATAAAATTTGATGA
AAGTTACGGTTCTGGGCAGGCGTTTTTCAAAAACTTGAGGTTTTCCACTTAGATTTAATT
AACAGTGATAACTGATCTCCTGATTTGCAATATTCACACACAAAAAAAAGAAGTTGAAAA
AGGGAGGAAAAAAACATGATTATATAGCCAAGGTGCAGATCCAGGTATTGTAACATTTTT
CAGTATTGAGTGACTTGAATACTAGGTAGGTCAGTAGCTCATCAAAATGCTTTCTCAGAA
AAGAGGAAGAAAGACAATCAGAGCAGGTCTGGTTTCAGGGCTGCTGCTCAAGTATCGCCT
GGCACAGTGTCTTGGGTGACCTTTTACATTTAACAAAGCTGGTAAGAAATGAGCGTGTCT
GATGTCTTCTGGCTTTTCCCAAGTGCTGTACATTTTTTAACAAATAAAAACTGTGAATAT
GTACATACAAACTATGTATTCCCCCTTTCTTATTTTTGAAAGTCAAAAAGCTCTAATTGG
GCGTGTCGGGTAAAAATTAGCTTGAAAATATATTTGTTTCATTAAAGGCTGGATAATAAG
AAAATCATGAGAGCGTTTAAGATACCGAAGTTGAAATCACTTAGTGATAAACCTACCAGG
TTCTTAAACAATTTCCTGCTCATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCATTTTAAGATCCAGTAGGCTAGGCACCCTCCTAAAATATACAGAATAAAATTTGATGA
AAGTTACGGTTCTGGGCAGGCGTTTTTCAAAAACTTGAGGTTTTCCACTTAGATTTAATT
AACAGTGATAACTGATCTCCTGATTTGCAATATTCACACACAAAAAAAAGAAGTTGAAAA
AGGGAGGAAAAAAACATGATTATATAGCCAAGGTGCAGATCCAGGTATTGTAACATTTTT
CAGTATTGAGTGACTTGAATACTAGGTAGGTCAGTAGCTCATCAAAATGCTTTCTCAGAA
AAGAGGAAGAAAGACAATCAGAGCAGGTCTGGTTTCAGGGCTGCTGCTCAAGTATCGCCT
GGCACAGTGTCTTGGGTGACCTTTTACATTTAACAAAGCTGGTAAGAAATGAGCGTGTCT
GATGTCTTCTGGCTTTTCCCAAGTGCTGTACATTTTTTAACAAATAAAAACTGTGAATAT
GTACATACAAACTATGTATTCCCCCTTTCTTATTTTTGAAAGTCAAAAAGCTCTAATTGG
GCGTGTCGGGTAAAAATTAGCTTGAAAATATATTTGTTTCATTAAAGGCTGGATAATAAG
AAAATCATGAGAGCGTTTAAGATACCGAAGTTGAAATCACTTAGTGATAAACCTACCAGG
TTCTTAAACAATTTCCTGCTCATT

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               22-684, gnl|bosTau2|chr9 (40663990-40663324)
               

               
               22-684, gnl|Hg17|chr6 (134351594-134352268)
               

               
               22-684, gnl|Mm7|chr10 (22461029-22460444)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               22-684, gnl|bosTau2|chr9 (40663990-40663324)
               

               
               22-684, gnl|Hg17|chr6 (134351594-134352268)
               

               
               22-684, gnl|Mm7|chr10 (22461029-22460444)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               cte (0.29274)
               

               
               aor (0.195274)
               

               
               sto (0.179824)
               

               
               csk (0.140746)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               spc (0.113366)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)
               

               
               aor (0.195274)
               

               
               sto (0.179824)
               

               
               csk (0.140746)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               spc (0.113366)

	22-684, gnl\|bosTau2\|chr9 (40663990-40663324)
	22-684, gnl\|Hg17\|chr6 (134351594-134352268)
	22-684, gnl\|Mm7\|chr10 (22461029-22460444)

	cte (0.29274)
	aor (0.195274)
	sto (0.179824)
	csk (0.140746)
	ste (0.135208)
	pla (0.133672)
	spc (0.113366)