Ss1.1-Pig3-SRG8011F06.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGATACCAATTGTAGAGTCAGAAATTAAAAAAGAAGCTGGTGAATTAAAACCTGAAGAAG AAATAACTGTGGGGCCAGTTCAGAAATTGGTAACTGAGATGGGCACCTATGCTACTCAGA GTGCCCTTAGCAGTTCTAGACCCACCAAGAAAGAGGAAGAAAGACCTCCTCTAAGAGGAT TCCTTCTGGATGGAGATTTCTTTGTTGCTGCCTCACTTGCCACAACTCTGACCAAGATTG CCTTGCGCTATGTAGCTTTGGTTCAGGAGAAGAAAAAGCAAAATTCTTTTGTTGCTGAGG CAATGTTGCTCATGGCCACTATCCTGCATTTGGGAAAATCCTCTCTTCCTAAGAAGCCAA TTACGGATGATGATGTAGATCGAATTTCCCTGTGCCTCAAAGTCTTATCTGAATGTTCAC CTTTAATGAATGACATTTTCAATAAGGAGTGCAGACAGTCTCTTTCCCACATGTTGTCTG CTAAACTTGAAGAAGAGAAATTATCCCAAAAGAAAGAATCTGAAAAGAGGAATGTGACAG TACAGCCTGATGACCCCATTTCCTTCATGCAACTAACTGCTAAGAATGAAATGAACTGCA AGGAAGATCAATTTCAGCTGAGTTTGCTGGCAGCAATGGGTAATACACAGAGGAAAGAGG CAGCAGATCCCCTAGCATCTAAACTTAACAAGGTCACTCAATTGACAGGTTTCTCAGACC CTGTATATGCAGAGGCTTATGTTCACGTCAACCAGTATGATATCGTCCTGGATGTACTTG TTGTGAACCAAACCAGTGATACCTTGCAGAACTGCACGTTAGAGTTAGCTACTCTGGGAG ATCTGAAACTTGTGGAAAAGCCATCTCCTTTGACTCTTGCTCCTCATGATTTTGCAAATA TTAAAGCGAATGTCAAAGTAGCATCAACAGAAAATGGGATAATCTTTGGTAATATAGTTT ATGATGTCTCTGGAGCAGCAAGCGACAGAAATTGTGTGGTCCTCAGTGATATTCACATTG ACATCATGGACTATATCCAGCCTGCAACTTGCACTGATGCCGAATTCCGTCAGATGTGGG CCGAATTTGAGTGGGAAAACAAAGTGACAGTTAACACAAATATAATTGATTTGAATGACT ACTTACAGCACATATTAAAGTCAACCAACATGAAATGCCTCACTCCAGAGAAGGCACTTT CTGGTTATTGTGGCTTTATGGCAGCCAACCTCTATGCTCGTTCCATCTTTGGAGAAGATG CACTTGCTAATGTCAGCATCGAAAAGCCAATTCAGCAGGGACCAGAGGCCCCTGTTACTG GCCACATAAGAATTCGTGCAAAGAGTCAGGGAATGGCCTTAAGTCTTGGAGATAAAATCA ACTTGTCTCAGAAGAAAACTAGTATATAAGAATAAACAAGTTCTTGCAGCTTTACAGTTA AGATTTAGGTATGGGCTTACTGGACTCCAACATCTTTTGTATTCTTTCATGCTTTATGTT ATATAGAATCTGAGTTCATGCTGAATGCATTCCAGCCAATAATTTATAGCCTTTCCCTTA AATCAAGATTGATTTTAAAATTATAGTTGTCTTTTGTCTTAACAGTTCTGAATGCTGTCC TCAAAGTATATAATGTTTCACACATGTATCAAGACCATTTTCACAGTACAATAAACCAAT CTATTCCTAAATCTTTTGTTATTTTATAAATAAATGTGTAATTACATA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGATACCAATTGTAGAGTCAGAAATTAAAAAAGAAGCTGGTGAATTAAAACCTGAAGAAG AAATAACTGTGGGGCCAGTTCAGAAATTGGTAACTGAGATGGGCACCTATGCTACTCAGA GTGCCCTTAGCAGTTCTAGACCCACCAAGAAAGAGGAAGAAAGACCTCCTCTAAGAGGAT TCCTTCTGGATGGAGATTTCTTTGTTGCTGCCTCACTTGCCACAACTCTGACCAAGATTG CCTTGCGCTATGTAGCTTTGGTTCAGGAGAAGAAAAAGCAAAATTCTTTTGTTGCTGAGG CAATGTTGCTCATGGCCACTATCCTGCATTTGGGAAAATCCTCTCTTCCTAAGAAGCCAA TTACGGATGATGATGTAGATCGAATTTCCCTGTGCCTCAAAGTCTTATCTGAATGTTCAC CTTTAATGAATGACATTTTCAATAAGGAGTGCAGACAGTCTCTTTCCCACATGTTGTCTG CTAAACTTGAAGAAGAGAAATTATCCCAAAAGAAAGAATCTGAAAAGAGGAATGTGACAG TACAGCCTGATGACCCCATTTCCTTCATGCAACTAACTGCTAAGAATGAAATGAACTGCA AGGAAGATCAATTTCAGCTGAGTTTGCTGGCAGCAATGGGTAATACACAGAGGAAAGAGG CAGCAGATCCCCTAGCATCTAAACTTAACAAGGTCACTCAATTGACAGGTTTCTCAGACC CTGTATATGCAGAGGCTTATGTTCACGTCAACCAGTATGATATCGTCCTGGATGTACTTG TTGTGAACCAAACCAGTGATACCTTGCAGAACTGCACGTTAGAGTTAGCTACTCTGGGAG ATCTGAAACTTGTGGAAAAGCCATCTCCTTTGACTCTTGCTCCTCATGATTTTGCAAATA TTAAAGCGAATGTCAAAGTAGCATCAACAGAAAATGGGATAATCTTTGGTAATATAGTTT ATGATGTCTCTGGAGCAGCAAGCGACAGAAATTGTGTGGTCCTCAGTGATATTCACATTG ACATCATGGACTATATCCAGCCTGCAACTTGCACTGATGCCGAATTCCGTCAGATGTGGG CCGAATTTGAGTGGGAAAACAAAGTGACAGTTAACACAAATATAATTGATTTGAATGACT ACTTACAGCACATATTAAAGTCAACCAACATGAAATGCCTCACTCCAGAGAAGGCACTTT CTGGTTATTGTGGCTTTATGGCAGCCAACCTCTATGCTCGTTCCATCTTTGGAGAAGATG CACTTGCTAATGTCAGCATCGAAAAGCCAATTCAGCAGGGACCAGAGGCCCCTGTTACTG GCCACATAAGAATTCGTGCAAAGAGTCAGGGAATGGCCTTAAGTCTTGGAGATAAAATCA ACTTGTCTCAGAAGAAAACTAGTATATAAGAATAAACAAGTTCTTGCAGCTTTACAGTTA AGATTTAGGTATGGGCTTACTGGACTCCAACATCTTTTGTATTCTTTCATGCTTTATGTT ATATAGAATCTGAGTTCATGCTGAATGCATTCCAGCCAATAATTTATAGCCTTTCCCTTA AATCAAGATTGATTTTAAAATTATAGTTGTCTTTTGTCTTAACAGTTCTGAATGCTGTCC TCAAAGTATATAATGTTTCACACATGTATCAAGACCATTTTCACAGTACAATAAACCAAT CTATTCCTAAATCTTTTGTTATTTTATAAATAAATGTGTAATTACATA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 941-1051, + strand, RNAz p=0.979034 | |
| 997-1105, - strand, RNAz p=0.944883 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 941-1051, + strand, RNAz p=0.979034 | |
| 997-1105, - strand, RNAz p=0.944883 |
| Aligned organism(s): 62 entry(ies) | More info |
| Aligned organism(s): 62 entry(ies) | Help | Less info |
| 1-163, gnl|bosTau2|chr15 (24599309-24599471) | |
| 1-163, gnl|canFam2|chr21 (40392060-40392268) | |
| 1-163, gnl|danRer3|chr8 (31967195-31967407) | |
| 1-163, gnl|dasNov1|scaffold_17272 (10003-10211) | |
| 1-163, gnl|echTel1|scaffold_318887 (109542-109737) | |
| 1-163, gnl|fr1|chrUn (51525536-51525725) | |
| 1-163, gnl|galGal2|chr5 (7919422-7919603) | |
| 1-163, gnl|hg17|chr11 (14453902-14454110) | |
| 1-163, gnl|Hg17|chr11 (14454069-14453907) | |
| 1-163, gnl|loxAfr1|scaffold_23642 (7372-7580) | |
| 1-163, gnl|mm7|chr7 (110149290-110149494) | |
| 1-163, gnl|Mm7|chr7 (110149456-110149294) | |
| 1-163, gnl|monDom2|scaffold_10 (57485305-57485098) | |
| 1-163, gnl|panTro1|chr9 (14661956-14662164) | |
| 1-163, gnl|rheMac2|chr14 (57441324-57441116) | |
| 1-163, gnl|rn3|chr1 (172347971-172348175) | |
| 1-163, gnl|tetNig1|chr5 (6682380-6682545) | |
| 1-163, gnl|xenTro1|scaffold_914 (268910-268690) | |
| 285-512, gnl|bosTau2|chr15 (24605113-24605340) | |
| 285-512, gnl|Hg17|chr11 (14447685-14447458) | |
| 285-512, gnl|Mm7|chr7 (110143271-110143044) | |
| 691-838, gnl|bosTau2|chr15 (24607978-24608125) | |
| 691-838, gnl|canFam2|chr21 (40383829-40383989) | |
| 691-838, gnl|danRer3|chr8 (31959444-31959604) | |
| 691-838, gnl|dasNov1|scaffold_90958 (6475-6342) | |
| 691-838, gnl|echTel1|scaffold_318887 (102959-103119) | |
| 691-838, gnl|fr1|chrUn (51524323-51524474) | |
| 691-838, gnl|galGal2|chr5 (7916885-7917038) | |
| 691-838, gnl|hg17|chr11 (14444391-14444551) | |
| 691-838, gnl|Hg17|chr11 (14444550-14444403) | |
| 691-838, gnl|loxAfr1|scaffold_53934 (14068-14228) | |
| 691-838, gnl|mm7|chr7 (110139287-110139447) | |
| 691-838, gnl|Mm7|chr7 (110139446-110139299) | |
| 691-838, gnl|monDom2|scaffold_10 (57501674-57501514) | |
| 691-838, gnl|oryCun1|scaffold_212799 (4916-5076) | |
| 691-838, gnl|panTro1|chr9 (14652456-14652616) | |
| 691-838, gnl|rheMac2|chr14 (57457130-57456970) | |
| 691-838, gnl|rn3|chr1 (172341777-172341937) | |
| 691-838, gnl|tetNig1|chr5 (6681290-6681441) | |
| 691-838, gnl|xenTro1|scaffold_914 (270466-270306) | |
| 941-1105, gnl|bosTau2|chr15 (24611745-24611910) | |
| 941-1105, gnl|canFam2|chr21 (40379154-40379321) | |
| 941-1105, gnl|danRer3|chr8 (31958861-31959035) | |
| 941-1105, gnl|dasNov1|scaffold_86982 (38374-38227) | |
| 941-1105, gnl|echTel1|scaffold_318887 (99120-99294) | |
| 941-1105, gnl|fr1|chrUn (51523895-51524067) | |
| 941-1105, gnl|galGal2|chr5 (7915694-7915862) | |
| 941-1105, gnl|hg17|chr11 (14439304-14439472) | |
| 941-1105, gnl|Hg17|chr11 (14439478-14439306) | |
| 941-1105, gnl|loxAfr1|scaffold_53934 (9490-9657) | |
| 941-1105, gnl|mm7|chr7 (110135619-110135786) | |
| 941-1105, gnl|Mm7|chr7 (110135792-110135621) | |
| 941-1105, gnl|monDom2|scaffold_10 (57503841-57503667) | |
| 941-1105, gnl|oryCun1|scaffold_134821 (18510-18673) | |
| 941-1105, gnl|panTro1|chr9 (14647391-14647559) | |
| 941-1105, gnl|rheMac2|chr14 (57461867-57461699) | |
| 941-1105, gnl|rn3|chr1 (172338343-172338506) | |
| 941-1105, gnl|tetNig1|chr5 (6680861-6681029) | |
| 941-1105, gnl|xenTro1|scaffold_914 (271237-271082) | |
| 1347-1728, gnl|bosTau2|chr15 (24615617-24616004) | |
| 1347-1728, gnl|Hg17|chr11 (14436008-14435640) | |
| 1347-1728, gnl|Mm7|chr7 (110132037-110131664) |
| Aligned organism(s): 62 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-163, gnl|bosTau2|chr15 (24599309-24599471) | |
| 1-163, gnl|canFam2|chr21 (40392060-40392268) | |
| 1-163, gnl|danRer3|chr8 (31967195-31967407) | |
| 1-163, gnl|dasNov1|scaffold_17272 (10003-10211) | |
| 1-163, gnl|echTel1|scaffold_318887 (109542-109737) | |
| 1-163, gnl|fr1|chrUn (51525536-51525725) | |
| 1-163, gnl|galGal2|chr5 (7919422-7919603) | |
| 1-163, gnl|hg17|chr11 (14453902-14454110) | |
| 1-163, gnl|Hg17|chr11 (14454069-14453907) | |
| 1-163, gnl|loxAfr1|scaffold_23642 (7372-7580) | |
| 1-163, gnl|mm7|chr7 (110149290-110149494) | |
| 1-163, gnl|Mm7|chr7 (110149456-110149294) | |
| 1-163, gnl|monDom2|scaffold_10 (57485305-57485098) | |
| 1-163, gnl|panTro1|chr9 (14661956-14662164) | |
| 1-163, gnl|rheMac2|chr14 (57441324-57441116) | |
| 1-163, gnl|rn3|chr1 (172347971-172348175) | |
| 1-163, gnl|tetNig1|chr5 (6682380-6682545) | |
| 1-163, gnl|xenTro1|scaffold_914 (268910-268690) | |
| 285-512, gnl|bosTau2|chr15 (24605113-24605340) | |
| 285-512, gnl|Hg17|chr11 (14447685-14447458) | |
| 285-512, gnl|Mm7|chr7 (110143271-110143044) | |
| 691-838, gnl|bosTau2|chr15 (24607978-24608125) | |
| 691-838, gnl|canFam2|chr21 (40383829-40383989) | |
| 691-838, gnl|danRer3|chr8 (31959444-31959604) | |
| 691-838, gnl|dasNov1|scaffold_90958 (6475-6342) | |
| 691-838, gnl|echTel1|scaffold_318887 (102959-103119) | |
| 691-838, gnl|fr1|chrUn (51524323-51524474) | |
| 691-838, gnl|galGal2|chr5 (7916885-7917038) | |
| 691-838, gnl|hg17|chr11 (14444391-14444551) | |
| 691-838, gnl|Hg17|chr11 (14444550-14444403) | |
| 691-838, gnl|loxAfr1|scaffold_53934 (14068-14228) | |
| 691-838, gnl|mm7|chr7 (110139287-110139447) | |
| 691-838, gnl|Mm7|chr7 (110139446-110139299) | |
| 691-838, gnl|monDom2|scaffold_10 (57501674-57501514) | |
| 691-838, gnl|oryCun1|scaffold_212799 (4916-5076) | |
| 691-838, gnl|panTro1|chr9 (14652456-14652616) | |
| 691-838, gnl|rheMac2|chr14 (57457130-57456970) | |
| 691-838, gnl|rn3|chr1 (172341777-172341937) | |
| 691-838, gnl|tetNig1|chr5 (6681290-6681441) | |
| 691-838, gnl|xenTro1|scaffold_914 (270466-270306) | |
| 941-1105, gnl|bosTau2|chr15 (24611745-24611910) | |
| 941-1105, gnl|canFam2|chr21 (40379154-40379321) | |
| 941-1105, gnl|danRer3|chr8 (31958861-31959035) | |
| 941-1105, gnl|dasNov1|scaffold_86982 (38374-38227) | |
| 941-1105, gnl|echTel1|scaffold_318887 (99120-99294) | |
| 941-1105, gnl|fr1|chrUn (51523895-51524067) | |
| 941-1105, gnl|galGal2|chr5 (7915694-7915862) | |
| 941-1105, gnl|hg17|chr11 (14439304-14439472) | |
| 941-1105, gnl|Hg17|chr11 (14439478-14439306) | |
| 941-1105, gnl|loxAfr1|scaffold_53934 (9490-9657) | |
| 941-1105, gnl|mm7|chr7 (110135619-110135786) | |
| 941-1105, gnl|Mm7|chr7 (110135792-110135621) | |
| 941-1105, gnl|monDom2|scaffold_10 (57503841-57503667) | |
| 941-1105, gnl|oryCun1|scaffold_134821 (18510-18673) | |
| 941-1105, gnl|panTro1|chr9 (14647391-14647559) | |
| 941-1105, gnl|rheMac2|chr14 (57461867-57461699) | |
| 941-1105, gnl|rn3|chr1 (172338343-172338506) | |
| 941-1105, gnl|tetNig1|chr5 (6680861-6681029) | |
| 941-1105, gnl|xenTro1|scaffold_914 (271237-271082) | |
| 1347-1728, gnl|bosTau2|chr15 (24615617-24616004) | |
| 1347-1728, gnl|Hg17|chr11 (14436008-14435640) | |
| 1347-1728, gnl|Mm7|chr7 (110132037-110131664) |
| Expressed library(ies): 40 entry(ies) | More info |
| Expressed library(ies): 40 entry(ies) | Help | Less info |
| mgp (0.692042) | |
| tbr (0.616713) | |
| lin (0.582411) | |
| fce (0.543183) | |
| gul (0.532765) | |
| rec (0.519211) | |
| ova (0.516529) | |
| ski (0.440205) | |
| lyg (0.399308) | |
| aor (0.390549) | |
| ret (0.3862) | |
| cmu (0.372787) | |
| tra (0.369276) | |
| sag (0.36543) | |
| mga (0.32041) | |
| fco (0.314416) | |
| isp (0.300752) | |
| cte (0.29274) | |
| hyp (0.285673) | |
| kid (0.259471) | |
| sug (0.254582) | |
| ece (0.229305) | |
| tes (0.207814) | |
| col (0.195008) | |
| mgm (0.180343) | |
| sto (0.179824) | |
| sin (0.174948) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| cki (0.165235) | |
| bfe (0.149858) | |
| fat (0.147427) | |
| liv (0.146284) | |
| pty (0.142714) | |
| csk (0.140746) | |
| ssp (0.13552) | |
| pla (0.133672) | |
| thg (0.126791) | |
| bla (0.124347) | |
| cty (0.10408) |
| Expressed library(ies): 40 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mgp (0.692042) | |
| tbr (0.616713) | |
| lin (0.582411) | |
| fce (0.543183) | |
| gul (0.532765) | |
| rec (0.519211) | |
| ova (0.516529) | |
| ski (0.440205) | |
| lyg (0.399308) | |
| aor (0.390549) | |
| ret (0.3862) | |
| cmu (0.372787) | |
| tra (0.369276) | |
| sag (0.36543) | |
| mga (0.32041) | |
| fco (0.314416) | |
| isp (0.300752) | |
| cte (0.29274) | |
| hyp (0.285673) | |
| kid (0.259471) | |
| sug (0.254582) | |
| ece (0.229305) | |
| tes (0.207814) | |
| col (0.195008) | |
| mgm (0.180343) | |
| sto (0.179824) | |
| sin (0.174948) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| cki (0.165235) | |
| bfe (0.149858) | |
| fat (0.147427) | |
| liv (0.146284) | |
| pty (0.142714) | |
| csk (0.140746) | |
| ssp (0.13552) | |
| pla (0.133672) | |
| thg (0.126791) | |
| bla (0.124347) | |
| cty (0.10408) |