Ss1.1-Pig3-SRG8011F18.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAACTGCGGTGGGCTTGGCAAGCGATCTCCGATAAAGAGGGCTCTGGCCTCGGAGGTCGT GGATTCACCTCTCTGGACTTGAGTGTGGCAGTCGCGATGTTTTTATCCCAGGCTGGGGCC CAGCCGCGGATGTGGGAAGCCAGCCCTTCGGAACACAAGAAATGGGTGGAAGTATTTAAA GCATGCGATGAAGATAACAAAGGCTATCTAAGCAGAGAGGACTTTAAAGTTGCTATTGTA ATGCTGTTTGGTTACAAGCCCTCCAAGATAGAAGCTGATTCTGTGATGTCATCAGTAGAG CCAAACACTTCCGGGATAGTACTTAAGGAGTTTTTAAGCATCGTAAGGAAAAAGAAGGAA GCTCAAGTATATTGGAATGAAATAAGACACATCTTCACAGCTTTTGACAGGCACTATCGT GGCTATTTAACTCTGGAAGACTTCAAAAAAGCATTTAGGCAAGTGGCACCCAAGTTACCG GAAAGGATTATTCTCGAGGTCTTTAGGGAAGTAGATCAAGATTCAGACGACCACGTCAGC TTTAAAGACTTCGAATATGCCATGAACTATGGACAAAAGTAAGCTGAGCTATTGTGCACT ACTTTTGGCAGTTTCAGGGGAGACCAGAATGGCTTGTGATGTATTTAAAAATCAACTTCC ACTCCACCGATGATGTAATGCTGCATACCTTCCATTAAATTCGTCATG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAACTGCGGTGGGCTTGGCAAGCGATCTCCGATAAAGAGGGCTCTGGCCTCGGAGGTCGT GGATTCACCTCTCTGGACTTGAGTGTGGCAGTCGCGATGTTTTTATCCCAGGCTGGGGCC CAGCCGCGGATGTGGGAAGCCAGCCCTTCGGAACACAAGAAATGGGTGGAAGTATTTAAA GCATGCGATGAAGATAACAAAGGCTATCTAAGCAGAGAGGACTTTAAAGTTGCTATTGTA ATGCTGTTTGGTTACAAGCCCTCCAAGATAGAAGCTGATTCTGTGATGTCATCAGTAGAG CCAAACACTTCCGGGATAGTACTTAAGGAGTTTTTAAGCATCGTAAGGAAAAAGAAGGAA GCTCAAGTATATTGGAATGAAATAAGACACATCTTCACAGCTTTTGACAGGCACTATCGT GGCTATTTAACTCTGGAAGACTTCAAAAAAGCATTTAGGCAAGTGGCACCCAAGTTACCG GAAAGGATTATTCTCGAGGTCTTTAGGGAAGTAGATCAAGATTCAGACGACCACGTCAGC TTTAAAGACTTCGAATATGCCATGAACTATGGACAAAAGTAAGCTGAGCTATTGTGCACT ACTTTTGGCAGTTTCAGGGGAGACCAGAATGGCTTGTGATGTATTTAAAAATCAACTTCC ACTCCACCGATGATGTAATGCTGCATACCTTCCATTAAATTCGTCATG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 172-284, gnl|bosTau2|chr10 (69713067-69713179) | |
| 172-284, gnl|canFam2|chr8 (64061402-64061663) | |
| 172-284, gnl|dasNov1|scaffold_1732 (4822-5086) | |
| 172-284, gnl|echTel1|scaffold_323755 (83199-83460) | |
| 172-284, gnl|galGal2|chr5 (40485921-40486169) | |
| 172-284, gnl|hg17|chr14 (89489984-89490246) | |
| 172-284, gnl|Hg17|chr14 (89490098-89489986) | |
| 172-284, gnl|loxAfr1|scaffold_2539 (40827-40557) | |
| 172-284, gnl|mm7|chr12 (97377276-97377545) | |
| 172-284, gnl|Mm7|chr12 (97377428-97377316) | |
| 172-284, gnl|monDom2|scaffold_8 (37089827-37089539) | |
| 172-284, gnl|oryCun1|scaffold_182673 (113916-114166) | |
| 172-284, gnl|panTro1|chr15 (89754229-89754494) | |
| 172-284, gnl|rheMac2|chr7 (153169502-153169767) | |
| 172-284, gnl|rn3|chr6 (124097098-124097363) | |
| 172-284, gnl|xenTro1|scaffold_22 (2067907-2068119) | |
| 313-415, gnl|bosTau2|chr10 (69736684-69736786) | |
| 313-415, gnl|canFam2|chr8 (64041094-64041342) | |
| 313-415, gnl|dasNov1|scaffold_1867 (5669-5434) | |
| 313-415, gnl|hg17|chr14 (89468538-89468796) | |
| 313-415, gnl|Hg17|chr14 (89468725-89468623) | |
| 313-415, gnl|loxAfr1|scaffold_2539 (57058-56799) | |
| 313-415, gnl|mm7|chr12 (97350257-97350541) | |
| 313-415, gnl|Mm7|chr12 (97350440-97350338) | |
| 313-415, gnl|monDom2|scaffold_8 (37128346-37128103) | |
| 313-415, gnl|panTro1|chr15 (89732851-89733109) | |
| 313-415, gnl|rheMac2|chr7 (153148008-153148269) | |
| 313-415, gnl|rn3|chr6 (124064858-124065098) | |
| 505-702, gnl|bosTau2|chr10 (69891252-69891054) | |
| 505-702, gnl|Hg17|chr14 (89333423-89333195) | |
| 505-702, gnl|Mm7|chr12 (97213846-97213656) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 172-284, gnl|bosTau2|chr10 (69713067-69713179) | |
| 172-284, gnl|canFam2|chr8 (64061402-64061663) | |
| 172-284, gnl|dasNov1|scaffold_1732 (4822-5086) | |
| 172-284, gnl|echTel1|scaffold_323755 (83199-83460) | |
| 172-284, gnl|galGal2|chr5 (40485921-40486169) | |
| 172-284, gnl|hg17|chr14 (89489984-89490246) | |
| 172-284, gnl|Hg17|chr14 (89490098-89489986) | |
| 172-284, gnl|loxAfr1|scaffold_2539 (40827-40557) | |
| 172-284, gnl|mm7|chr12 (97377276-97377545) | |
| 172-284, gnl|Mm7|chr12 (97377428-97377316) | |
| 172-284, gnl|monDom2|scaffold_8 (37089827-37089539) | |
| 172-284, gnl|oryCun1|scaffold_182673 (113916-114166) | |
| 172-284, gnl|panTro1|chr15 (89754229-89754494) | |
| 172-284, gnl|rheMac2|chr7 (153169502-153169767) | |
| 172-284, gnl|rn3|chr6 (124097098-124097363) | |
| 172-284, gnl|xenTro1|scaffold_22 (2067907-2068119) | |
| 313-415, gnl|bosTau2|chr10 (69736684-69736786) | |
| 313-415, gnl|canFam2|chr8 (64041094-64041342) | |
| 313-415, gnl|dasNov1|scaffold_1867 (5669-5434) | |
| 313-415, gnl|hg17|chr14 (89468538-89468796) | |
| 313-415, gnl|Hg17|chr14 (89468725-89468623) | |
| 313-415, gnl|loxAfr1|scaffold_2539 (57058-56799) | |
| 313-415, gnl|mm7|chr12 (97350257-97350541) | |
| 313-415, gnl|Mm7|chr12 (97350440-97350338) | |
| 313-415, gnl|monDom2|scaffold_8 (37128346-37128103) | |
| 313-415, gnl|panTro1|chr15 (89732851-89733109) | |
| 313-415, gnl|rheMac2|chr7 (153148008-153148269) | |
| 313-415, gnl|rn3|chr6 (124064858-124065098) | |
| 505-702, gnl|bosTau2|chr10 (69891252-69891054) | |
| 505-702, gnl|Hg17|chr14 (89333423-89333195) | |
| 505-702, gnl|Mm7|chr12 (97213846-97213656) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| tes (0.831255) | |
| isp (0.150376) | |
| pty (0.142714) | |
| ova (0.129132) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.831255) | |
| isp (0.150376) | |
| pty (0.142714) | |
| ova (0.129132) |