Non-Coding RNA Search

Ss1.1-Pig3-SRG8011G01.5

Sequence:


               
               AGAGGAAGAAGGTGGGGAGGAAGAGGAGGAGGAGGAGGAAGGTGATGGTGAGTACCCTTC
CCTGGTCTGTAGAAAATGGGGAGGTGTTGGGGGGCTACCTGAGGGTGGCAGTGGGGCCAC
TGGAACACCTACAGTTGTTCCTGTAGAGGCAGCATCTTCCTCCTTGCTTTAGGCTGGTGA
TGGGAAGCTGTGTCCTGCGCTTTGCATACCCGCTCCCACTGGAGCGTGCCCTCCGCACTG
ACCAGTTGGTCTGGCTTCTCTGGGTGTGGCTGCTTGAACTTTCTCTCTGAAGACAAGATG
CCTGTGATGGGCAGTGTGGCTGCTCCTGGCTGCCCAGTTTGTCAGGTGGCAGACACAGAT
CAGGGGCACTCAACCCTGGCTAGTCTGTTACTGGGAGATTGCCCAAGTCGGCTGTGATTT
TCCTGCGGCCTCCACCCCGTTGCTGGCTGCCACTGGGTGGGACGGTACCAAGACCACCCT
CCCTGGCTGGCTGAGGAAGGCGCAGTGGTTTACCTGGGTTTACTCTCTCCAGGTGAGGAA
GAGGATGGAGATGAAGATGAGGAGGCTGAGGCAGCTACAGGCAAACGGGCAGCTGAAGAT
GATGAGGTGGGTCTGGCTTCAAGATTGGAATCGGGGGCAGGAAAGGGGGGACTGATGGAA
CTTGAGGAGCTGCCGGTTGGTGTGGTGCCTGGTCCCGAGGGGGTCCTTGCTCACGTTGAG
CGGGAACTGGAAGGCGCCTGGGCCCAGCCTCCCAGAGCTCTAGAGGCCCCCGGGGCTGCT
TGTGCCTCTCCTCACTGTGCGCCCAGCGGCTGAGGGTGTTTGGTGGGTGGGCGCAGTGGG
TGGGAGGGGCGCTGACAGTCTCTCCCTGCTCAGGACGACGATGTGGACACCAAGAAGCAG
AAGACCGATGAGGATGACTAGACAGCAAAAAAGGAAAAGCTAAAACTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAGGAAGAAGGTGGGGAGGAAGAGGAGGAGGAGGAGGAAGGTGATGGTGAGTACCCTTC
CCTGGTCTGTAGAAAATGGGGAGGTGTTGGGGGGCTACCTGAGGGTGGCAGTGGGGCCAC
TGGAACACCTACAGTTGTTCCTGTAGAGGCAGCATCTTCCTCCTTGCTTTAGGCTGGTGA
TGGGAAGCTGTGTCCTGCGCTTTGCATACCCGCTCCCACTGGAGCGTGCCCTCCGCACTG
ACCAGTTGGTCTGGCTTCTCTGGGTGTGGCTGCTTGAACTTTCTCTCTGAAGACAAGATG
CCTGTGATGGGCAGTGTGGCTGCTCCTGGCTGCCCAGTTTGTCAGGTGGCAGACACAGAT
CAGGGGCACTCAACCCTGGCTAGTCTGTTACTGGGAGATTGCCCAAGTCGGCTGTGATTT
TCCTGCGGCCTCCACCCCGTTGCTGGCTGCCACTGGGTGGGACGGTACCAAGACCACCCT
CCCTGGCTGGCTGAGGAAGGCGCAGTGGTTTACCTGGGTTTACTCTCTCCAGGTGAGGAA
GAGGATGGAGATGAAGATGAGGAGGCTGAGGCAGCTACAGGCAAACGGGCAGCTGAAGAT
GATGAGGTGGGTCTGGCTTCAAGATTGGAATCGGGGGCAGGAAAGGGGGGACTGATGGAA
CTTGAGGAGCTGCCGGTTGGTGTGGTGCCTGGTCCCGAGGGGGTCCTTGCTCACGTTGAG
CGGGAACTGGAAGGCGCCTGGGCCCAGCCTCCCAGAGCTCTAGAGGCCCCCGGGGCTGCT
TGTGCCTCTCCTCACTGTGCGCCCAGCGGCTGAGGGTGTTTGGTGGGTGGGCGCAGTGGG
TGGGAGGGGCGCTGACAGTCTCTCCCTGCTCAGGACGACGATGTGGACACCAAGAAGCAG
AAGACCGATGAGGATGACTAGACAGCAAAAAAGGAAAAGCTAAAACTT

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

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               432-616, gnl|bosTau2|chr2 (73828653-73828467)
               

               
               432-616, gnl|Hg17|chr2 (232402536-232402737)
               


               
               822-944, gnl|bosTau2|chr2 (73828287-73828164)
               

               
               822-944, gnl|Hg17|chr2 (232402964-232403089)
               

               
               822-944, gnl|Mm7|chr1 (86430586-86430708)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               432-616, gnl|bosTau2|chr2 (73828653-73828467)
               

               
               432-616, gnl|Hg17|chr2 (232402536-232402737)
               


               
               822-944, gnl|bosTau2|chr2 (73828287-73828164)
               

               
               822-944, gnl|Hg17|chr2 (232402964-232403089)
               

               
               822-944, gnl|Mm7|chr1 (86430586-86430708)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

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               spl (0.143184)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               med (0.116252)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               med (0.116252)

	432-616, gnl\|bosTau2\|chr2 (73828653-73828467)
	432-616, gnl\|Hg17\|chr2 (232402536-232402737)

	822-944, gnl\|bosTau2\|chr2 (73828287-73828164)
	822-944, gnl\|Hg17\|chr2 (232402964-232403089)
	822-944, gnl\|Mm7\|chr1 (86430586-86430708)