Non-Coding RNA Search

Ss1.1-Pig3-SRG8011G09.3

Sequence:


               
               CAAATCACGAAGTCCCCGCCAGCAGGCTCAGCAGTTGGGGACCTCCTTCCCCACAGCTGA
CAGATTGACTCAGATTTTCTGAGGCTGGAATGTTCACTGAGGACCCTGGAGAAAGAATCC
GCCGAAGGTCCCGGCTCTGCTGCGATCCATCTCCTGGAATTTCCATGTGAATCACAGCTC
TGCACCTGGATGGAGCCTATTCTTTTGTGTGTGTGTTTTTTTGTTGTTTTTTTTTTTTTT
TAATTGGTTCAACATTTGCTGCTAATGGGACTTGCCCAGCTGAGTGCTGGCTCTTAGGAA
GCCCATGTTTCTTTGGTAACTTAAAGGAAAAAGGGAGAGGAGGGAGGGAAAGAAACCCCT
CCACTGAGACCCCAAACCTGGGCTCCCAGGTATGGCCCAGGGGGCCCAGGCTGGCTGGAT
GCTGCCTGCGGACTCGGAGTCCCTGAGTGCGGCTGTGTTGTGAATTCTCCTCCTTCCTCT
TCCTCCGAGGTTTTGAGTTGGCTGCTGGTTAGCAAACTCCTTTTTACCCATATAAGTTAT
TTAATATAATAATGAAGCTCAACACTGTGGTAGGAAAATAGCCACTAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAATCACGAAGTCCCCGCCAGCAGGCTCAGCAGTTGGGGACCTCCTTCCCCACAGCTGA
CAGATTGACTCAGATTTTCTGAGGCTGGAATGTTCACTGAGGACCCTGGAGAAAGAATCC
GCCGAAGGTCCCGGCTCTGCTGCGATCCATCTCCTGGAATTTCCATGTGAATCACAGCTC
TGCACCTGGATGGAGCCTATTCTTTTGTGTGTGTGTTTTTTTGTTGTTTTTTTTTTTTTT
TAATTGGTTCAACATTTGCTGCTAATGGGACTTGCCCAGCTGAGTGCTGGCTCTTAGGAA
GCCCATGTTTCTTTGGTAACTTAAAGGAAAAAGGGAGAGGAGGGAGGGAAAGAAACCCCT
CCACTGAGACCCCAAACCTGGGCTCCCAGGTATGGCCCAGGGGGCCCAGGCTGGCTGGAT
GCTGCCTGCGGACTCGGAGTCCCTGAGTGCGGCTGTGTTGTGAATTCTCCTCCTTCCTCT
TCCTCCGAGGTTTTGAGTTGGCTGCTGGTTAGCAAACTCCTTTTTACCCATATAAGTTAT
TTAATATAATAATGAAGCTCAACACTGTGGTAGGAAAATAGCCACTAG

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               84-202, - strand, RNAz p=0.543297
               

               
               278-426, - strand, RNAz p=0.997964
               

               
               465-578, - strand, RNAz p=0.649277

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               84-202, - strand, RNAz p=0.543297
               

               
               278-426, - strand, RNAz p=0.997964
               

               
               465-578, - strand, RNAz p=0.649277

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               278-348, LB0265.CR_C05 GC_BGC-26 Bos taurus cDNA clone IMAGE (gb|DV884569.1|), 
blast E-value=3e-21, identity=94.37% 
               

               
               278-348, LB0286.CR_G16 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb|DV915026.1|), 
blast E-value=3e-21, identity=94.37% 
               

               
               278-348, 010126BEMN058490HT BEMN Bos taurus cDNA, mRNA sequence 
(gb|DY068883.1|), blast E-value=3e-21, identity=94.37% 
               

               
               278-348, 000217BCEB009089HT BCEB Bos taurus cDNA, mRNA sequence 
(gb|DY086360.1|), blast E-value=3e-21, identity=94.37% 
               

               
               278-348, 1589312 MARC 11BOV Bos taurus cDNA 5', mRNA sequence (gb|DY459032.1|), 
blast E-value=3e-21, identity=94.37% 
               

               
               278-348, 1604474 MARC 11BOV Bos taurus cDNA 5', mRNA sequence (gb|DY464285.1|), 
blast E-value=3e-21, identity=94.37%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               278-348, LB0265.CR_C05 GC_BGC-26 Bos taurus cDNA clone IMAGE (gb|DV884569.1|), 
blast E-value=3e-21, identity=94.37% 
               

               
               278-348, LB0286.CR_G16 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb|DV915026.1|), 
blast E-value=3e-21, identity=94.37% 
               

               
               278-348, 010126BEMN058490HT BEMN Bos taurus cDNA, mRNA sequence 
(gb|DY068883.1|), blast E-value=3e-21, identity=94.37% 
               

               
               278-348, 000217BCEB009089HT BCEB Bos taurus cDNA, mRNA sequence 
(gb|DY086360.1|), blast E-value=3e-21, identity=94.37% 
               

               
               278-348, 1589312 MARC 11BOV Bos taurus cDNA 5', mRNA sequence (gb|DY459032.1|), 
blast E-value=3e-21, identity=94.37% 
               

               
               278-348, 1604474 MARC 11BOV Bos taurus cDNA 5', mRNA sequence (gb|DY464285.1|), 
blast E-value=3e-21, identity=94.37%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-588, gnl|bosTau2|chr6 (54546725-54546125)
               

               
               2-588, gnl|Hg17|chr4 (82706011-82705398)
               

               
               2-588, gnl|Mm7|chr5 (98433450-98432868)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-588, gnl|bosTau2|chr6 (54546725-54546125)
               

               
               2-588, gnl|Hg17|chr4 (82706011-82705398)
               

               
               2-588, gnl|Mm7|chr5 (98433450-98432868)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               ece (0.229305)
               

               
               fhi (0.169578)
               

               
               cly (0.120642)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               fhi (0.169578)
               

               
               cly (0.120642)

	84-202, - strand, RNAz p=0.543297
	278-426, - strand, RNAz p=0.997964
	465-578, - strand, RNAz p=0.649277

	278-348, LB0265.CR_C05 GC_BGC-26 Bos taurus cDNA clone IMAGE (gb\|DV884569.1\|), blast E-value=3e-21, identity=94.37%
	278-348, LB0286.CR_G16 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb\|DV915026.1\|), blast E-value=3e-21, identity=94.37%
	278-348, 010126BEMN058490HT BEMN Bos taurus cDNA, mRNA sequence (gb\|DY068883.1\|), blast E-value=3e-21, identity=94.37%
	278-348, 000217BCEB009089HT BCEB Bos taurus cDNA, mRNA sequence (gb\|DY086360.1\|), blast E-value=3e-21, identity=94.37%
	278-348, 1589312 MARC 11BOV Bos taurus cDNA 5', mRNA sequence (gb\|DY459032.1\|), blast E-value=3e-21, identity=94.37%
	278-348, 1604474 MARC 11BOV Bos taurus cDNA 5', mRNA sequence (gb\|DY464285.1\|), blast E-value=3e-21, identity=94.37%

	2-588, gnl\|bosTau2\|chr6 (54546725-54546125)
	2-588, gnl\|Hg17\|chr4 (82706011-82705398)
	2-588, gnl\|Mm7\|chr5 (98433450-98432868)