Non-Coding RNA Search

Ss1.1-Pig3-SRG8011H05.3

Sequence:


               
               GCGATCGCTAATGCAGCCAATGTGGGGTTGGCAGGTTATTTTTACTCTCAAGACCTAGCC
CAGATCTGGAGGGTAGCAGAGCAACTGGAAGTTGGCATGGTTGGCGTTAACGAAGGATTG
ATCTCCTCCGTGGAGTGCCCTTTTGGTGGGGTGAAGCAGTCTGGCCTCGGAAGAGAGGGC
TCCAAGTATGGCATTGATGAGTATCTGGAACTCAAGTACGTGTGCTTTGGAGGCTTGTAG
GAATTCTTTCACAAATAAAAAAGGAAGCTTACCTACATATATGGGGACATGCCATCCATC
ATTTTAAATAAATTCATAAGGCATCTGAATTAGGAATTTTTAAAAGCGTATCCAGTCCTC
ATAATCGTAAGCAGATGCGAATCCTACTCCTCCCCTTACCTGACTAGGGAACAATATATG
CCTGTGGCCACAGACTGCCTGAGAACCAGCATTGGGTTTATAGAATGAAGCCCAGGACCC
CACCATGGCTGGATTCCTACCTGGGCAATGACACAGCCAGCGCCCTCATGGCTCGGCAGC
AAGAGAACTGCAGGGGAGACCCCTGAATGTGACTGAAGGGCCTGTTAGGGGTGGCCCAGC
CCCCTGGCAACCTGCCAGCTCAACACTAAAGACACTTGCTGTGGATTTGGAGTTATTGCT
GCAGAGGCCAAATGACTCATTTTTTAAGGCTTCAGAAATAGCAGAGAATTGCCTCTGTTT
TTTGAAAATGAAGGAACCCCTCTTCCTTACTCTGGGCCATTTTTTACATTAAAGTCTTCA
TCATCCTAAATTGACTACTTAAAGATTTTGTTTTCACTTCTGTCCTGTTTTGCATTTCAT
GTTGTTTCCAGTAGGAAACGAGCTTAAGTATAAAGCAAAGCAGGGCAGCAGCAGCTTGCT
GGGATGGATGGCACACAAGTAATGGCCTGGCCTGGCTTTGTTCCCACAGATGTGCCATGC
AAGCCCCCTCCCTCATGGGGAGTGGAGGCTTTATCCATGCCTTATTTAGCTCGATGGGAT
ATTGTGAGCTTAAGAGAAAACAAAAGTATTTGCCCCAAAATGAAAATTCCATGTAAGTAC
AGGAGCCACCATTATTGTGAGCATCACTGCCCAGCATTGCTCGGGCATCCAGCAGTACCC
ATCTGCCCACCACCTGAGCCTGAGTGAGGACCTGTCACCTGCAGCCTGCTCTTTCTGTCC
TCATGAGGTACCGCTCCTTCACCTGCAGAAGAGCAAAAGCACTTTGGCCACAATAGCCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGATCGCTAATGCAGCCAATGTGGGGTTGGCAGGTTATTTTTACTCTCAAGACCTAGCC
CAGATCTGGAGGGTAGCAGAGCAACTGGAAGTTGGCATGGTTGGCGTTAACGAAGGATTG
ATCTCCTCCGTGGAGTGCCCTTTTGGTGGGGTGAAGCAGTCTGGCCTCGGAAGAGAGGGC
TCCAAGTATGGCATTGATGAGTATCTGGAACTCAAGTACGTGTGCTTTGGAGGCTTGTAG
GAATTCTTTCACAAATAAAAAAGGAAGCTTACCTACATATATGGGGACATGCCATCCATC
ATTTTAAATAAATTCATAAGGCATCTGAATTAGGAATTTTTAAAAGCGTATCCAGTCCTC
ATAATCGTAAGCAGATGCGAATCCTACTCCTCCCCTTACCTGACTAGGGAACAATATATG
CCTGTGGCCACAGACTGCCTGAGAACCAGCATTGGGTTTATAGAATGAAGCCCAGGACCC
CACCATGGCTGGATTCCTACCTGGGCAATGACACAGCCAGCGCCCTCATGGCTCGGCAGC
AAGAGAACTGCAGGGGAGACCCCTGAATGTGACTGAAGGGCCTGTTAGGGGTGGCCCAGC
CCCCTGGCAACCTGCCAGCTCAACACTAAAGACACTTGCTGTGGATTTGGAGTTATTGCT
GCAGAGGCCAAATGACTCATTTTTTAAGGCTTCAGAAATAGCAGAGAATTGCCTCTGTTT
TTTGAAAATGAAGGAACCCCTCTTCCTTACTCTGGGCCATTTTTTACATTAAAGTCTTCA
TCATCCTAAATTGACTACTTAAAGATTTTGTTTTCACTTCTGTCCTGTTTTGCATTTCAT
GTTGTTTCCAGTAGGAAACGAGCTTAAGTATAAAGCAAAGCAGGGCAGCAGCAGCTTGCT
GGGATGGATGGCACACAAGTAATGGCCTGGCCTGGCTTTGTTCCCACAGATGTGCCATGC
AAGCCCCCTCCCTCATGGGGAGTGGAGGCTTTATCCATGCCTTATTTAGCTCGATGGGAT
ATTGTGAGCTTAAGAGAAAACAAAAGTATTTGCCCCAAAATGAAAATTCCATGTAAGTAC
AGGAGCCACCATTATTGTGAGCATCACTGCCCAGCATTGCTCGGGCATCCAGCAGTACCC
ATCTGCCCACCACCTGAGCCTGAGTGAGGACCTGTCACCTGCAGCCTGCTCTTTCTGTCC
TCATGAGGTACCGCTCCTTCACCTGCAGAAGAGCAAAAGCACTTTGGCCACAATAGCCTC

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

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               29-473, gnl|bosTau2|chr23 (26733035-26732590)
               

               
               29-473, gnl|Hg17|chr6 (24641708-24642168)
               

               
               29-473, gnl|Mm7|chr13 (24277574-24277146)
               


               
               478-1136, gnl|bosTau2|chr23 (26732502-26731838)
               

               
               478-1136, gnl|Hg17|chr6 (24642237-24642917)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               29-473, gnl|bosTau2|chr23 (26733035-26732590)
               

               
               29-473, gnl|Hg17|chr6 (24641708-24642168)
               

               
               29-473, gnl|Mm7|chr13 (24277574-24277146)
               


               
               478-1136, gnl|bosTau2|chr23 (26732502-26731838)
               

               
               478-1136, gnl|Hg17|chr6 (24642237-24642917)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               fce (0.271592)
               

               
               fbs (0.175346)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               fbs (0.175346)

	29-473, gnl\|bosTau2\|chr23 (26733035-26732590)
	29-473, gnl\|Hg17\|chr6 (24641708-24642168)
	29-473, gnl\|Mm7\|chr13 (24277574-24277146)

	478-1136, gnl\|bosTau2\|chr23 (26732502-26731838)
	478-1136, gnl\|Hg17\|chr6 (24642237-24642917)