Ss1.1-Pig3-SRG8011K05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGACGCACTAAGTGGCTGGCGGGGCAGTTGCGGCAGCCGGGATTGCAGGATCTTGGCCAT GGGGGTTTTGAAGGACGAGCTGCTCAAGGCCATCTGGCACGCTTTCACCGCACTCGACCT GGACCACAGTGGCAAGGTTTCCAAGTCCCAACTCAAGGTCCTCTCCCATAACCTGTGCAC GGTGCTGAAGGTTCCGCATGACCCCGTTGCCCTTGAAGAGCACTTCAGGGATGATGATGA GGGACCCGTCTCCAATCAGGGCTACATGCCATATTTAAACAAGTTCATTTTGGAAAAGGT CCAAGACAATTTTGACAAGATTGAATTCAATAGGATGTGTTGGACCCTCTGTGTCAAAAA AAACCTCACGAAGAGTCCCCTGCTCATTACGGAAGATGATGCATTTAAAATATGGGTTAT TTTCAACTTTTTATCTGAAGACAAGTATCCACTAGTGATTGTGCCAGAAGAGATTGAATA CCTGCTTAAGAAACTTACAGAAGCTATGGGAGGAGGTTGGCAACAAGAACAATTTGAACA TTATAAAATCAACTTTGATGACAGTAAAGATGGCCTTTCTGCATGGGAACTGATTGAGCT CATTGGAAATGGACAGTTTAGCAAAGGCATGGATCGGCAGACGGTGTCCATGGCAATTAA TGAAGTTTTTAATGAGCTTATATTAGATGTTTTGAAACAGGGTTACATGATGAAAAAAGG CCATAGACGGAAAAACTGGACCGAACGCTGGTTTGTACTAAAACCCAACATAATTTCTTA CTATGTGAGTGAGGATCTGAAAGATAAGAAGGGAGACATTCTCTTGGATGAGAACTGCTG TGTGGAGTCCTTGCCTGACAGAGATGGAAAGAAGTGCCTTTTTCTCATAAAATGTTTTGA TAAGACCTTCGAAATCAGTGCTTCAGATAAGAAGAAAAAGCAAGAGTGGATTCAGGCCAT CCAGTCTACCATCCATCTGCTGAAGCTGGGCAGCCCCCCACCACACAAAGAAGCCCGCCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGACGCACTAAGTGGCTGGCGGGGCAGTTGCGGCAGCCGGGATTGCAGGATCTTGGCCAT GGGGGTTTTGAAGGACGAGCTGCTCAAGGCCATCTGGCACGCTTTCACCGCACTCGACCT GGACCACAGTGGCAAGGTTTCCAAGTCCCAACTCAAGGTCCTCTCCCATAACCTGTGCAC GGTGCTGAAGGTTCCGCATGACCCCGTTGCCCTTGAAGAGCACTTCAGGGATGATGATGA GGGACCCGTCTCCAATCAGGGCTACATGCCATATTTAAACAAGTTCATTTTGGAAAAGGT CCAAGACAATTTTGACAAGATTGAATTCAATAGGATGTGTTGGACCCTCTGTGTCAAAAA AAACCTCACGAAGAGTCCCCTGCTCATTACGGAAGATGATGCATTTAAAATATGGGTTAT TTTCAACTTTTTATCTGAAGACAAGTATCCACTAGTGATTGTGCCAGAAGAGATTGAATA CCTGCTTAAGAAACTTACAGAAGCTATGGGAGGAGGTTGGCAACAAGAACAATTTGAACA TTATAAAATCAACTTTGATGACAGTAAAGATGGCCTTTCTGCATGGGAACTGATTGAGCT CATTGGAAATGGACAGTTTAGCAAAGGCATGGATCGGCAGACGGTGTCCATGGCAATTAA TGAAGTTTTTAATGAGCTTATATTAGATGTTTTGAAACAGGGTTACATGATGAAAAAAGG CCATAGACGGAAAAACTGGACCGAACGCTGGTTTGTACTAAAACCCAACATAATTTCTTA CTATGTGAGTGAGGATCTGAAAGATAAGAAGGGAGACATTCTCTTGGATGAGAACTGCTG TGTGGAGTCCTTGCCTGACAGAGATGGAAAGAAGTGCCTTTTTCTCATAAAATGTTTTGA TAAGACCTTCGAAATCAGTGCTTCAGATAAGAAGAAAAAGCAAGAGTGGATTCAGGCCAT CCAGTCTACCATCCATCTGCTGAAGCTGGGCAGCCCCCCACCACACAAAGAAGCCCGCCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 156-247, - strand, RNAz p=0.549944 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 156-247, - strand, RNAz p=0.549944 |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 156-300, gnl|bosTau2|chr15 (26028348-26028492) | |
| 156-300, gnl|canFam2|chr21 (36123749-36123917) | |
| 156-300, gnl|danRer3|chr1 (1735311-1735471) | |
| 156-300, gnl|dasNov1|scaffold_11134 (44914-44746) | |
| 156-300, gnl|fr1|chrUn (37153929-37153765) | |
| 156-300, gnl|galGal2|chr5 (6825751-6825582) | |
| 156-300, gnl|hg17|chr11 (9672244-9672413) | |
| 156-300, gnl|Hg17|chr11 (9672267-9672411) | |
| 156-300, gnl|loxAfr1|scaffold_11708 (21664-21494) | |
| 156-300, gnl|mm7|chr7 (106158628-106158799) | |
| 156-300, gnl|Mm7|chr7 (106158653-106158797) | |
| 156-300, gnl|monDom2|scaffold_10 (59863497-59863663) | |
| 156-300, gnl|oryCun1|scaffold_179903 (11417-11588) | |
| 156-300, gnl|panTro1|chr9 (9851834-9852003) | |
| 156-300, gnl|rheMac2|chr14 (62255428-62255259) | |
| 156-300, gnl|rn3|chr1 (168021144-168021315) | |
| 156-300, gnl|tetNig1|chr5 (6389660-6389492) | |
| 156-300, gnl|xenTro1|scaffold_37 (2569308-2569150) | |
| 471-701, gnl|bosTau2|chr15 (29262400-29262630) | |
| 471-701, gnl|canFam2|chr21 (36150927-36151168) | |
| 471-701, gnl|danRer3|chr1 (1749520-1749759) | |
| 471-701, gnl|echTel1|scaffold_293040 (2212-2450) | |
| 471-701, gnl|fr1|chrUn (37152969-37152737) | |
| 471-701, gnl|galGal2|chr5 (6813620-6813382) | |
| 471-701, gnl|hg17|chr11 (9702777-9703015) | |
| 471-701, gnl|Hg17|chr11 (9702779-9703009) | |
| 471-701, gnl|loxAfr1|scaffold_2397 (19094-19332) | |
| 471-701, gnl|mm7|chr7 (106179147-106179385) | |
| 471-701, gnl|Mm7|chr7 (106179149-106179379) | |
| 471-701, gnl|monDom2|scaffold_10 (59890220-59890458) | |
| 471-701, gnl|oryCun1|scaffold_147833 (3084-3322) | |
| 471-701, gnl|panTro1|chr9 (9881094-9881332) | |
| 471-701, gnl|rheMac2|chr14 (62226758-62226520) | |
| 471-701, gnl|rn3|chr1 (168041244-168041482) | |
| 471-701, gnl|tetNig1|chr5 (6388596-6388363) | |
| 471-701, gnl|xenTro1|scaffold_12824 (5951-6189) | |
| 846-956, gnl|bosTau2|chr15 (29265019-29265129) | |
| 846-956, gnl|Hg17|chr11 (9707464-9707574) | |
| 846-956, gnl|Mm7|chr7 (106183051-106183161) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 156-300, gnl|bosTau2|chr15 (26028348-26028492) | |
| 156-300, gnl|canFam2|chr21 (36123749-36123917) | |
| 156-300, gnl|danRer3|chr1 (1735311-1735471) | |
| 156-300, gnl|dasNov1|scaffold_11134 (44914-44746) | |
| 156-300, gnl|fr1|chrUn (37153929-37153765) | |
| 156-300, gnl|galGal2|chr5 (6825751-6825582) | |
| 156-300, gnl|hg17|chr11 (9672244-9672413) | |
| 156-300, gnl|Hg17|chr11 (9672267-9672411) | |
| 156-300, gnl|loxAfr1|scaffold_11708 (21664-21494) | |
| 156-300, gnl|mm7|chr7 (106158628-106158799) | |
| 156-300, gnl|Mm7|chr7 (106158653-106158797) | |
| 156-300, gnl|monDom2|scaffold_10 (59863497-59863663) | |
| 156-300, gnl|oryCun1|scaffold_179903 (11417-11588) | |
| 156-300, gnl|panTro1|chr9 (9851834-9852003) | |
| 156-300, gnl|rheMac2|chr14 (62255428-62255259) | |
| 156-300, gnl|rn3|chr1 (168021144-168021315) | |
| 156-300, gnl|tetNig1|chr5 (6389660-6389492) | |
| 156-300, gnl|xenTro1|scaffold_37 (2569308-2569150) | |
| 471-701, gnl|bosTau2|chr15 (29262400-29262630) | |
| 471-701, gnl|canFam2|chr21 (36150927-36151168) | |
| 471-701, gnl|danRer3|chr1 (1749520-1749759) | |
| 471-701, gnl|echTel1|scaffold_293040 (2212-2450) | |
| 471-701, gnl|fr1|chrUn (37152969-37152737) | |
| 471-701, gnl|galGal2|chr5 (6813620-6813382) | |
| 471-701, gnl|hg17|chr11 (9702777-9703015) | |
| 471-701, gnl|Hg17|chr11 (9702779-9703009) | |
| 471-701, gnl|loxAfr1|scaffold_2397 (19094-19332) | |
| 471-701, gnl|mm7|chr7 (106179147-106179385) | |
| 471-701, gnl|Mm7|chr7 (106179149-106179379) | |
| 471-701, gnl|monDom2|scaffold_10 (59890220-59890458) | |
| 471-701, gnl|oryCun1|scaffold_147833 (3084-3322) | |
| 471-701, gnl|panTro1|chr9 (9881094-9881332) | |
| 471-701, gnl|rheMac2|chr14 (62226758-62226520) | |
| 471-701, gnl|rn3|chr1 (168041244-168041482) | |
| 471-701, gnl|tetNig1|chr5 (6388596-6388363) | |
| 471-701, gnl|xenTro1|scaffold_12824 (5951-6189) | |
| 846-956, gnl|bosTau2|chr15 (29265019-29265129) | |
| 846-956, gnl|Hg17|chr11 (9707464-9707574) | |
| 846-956, gnl|Mm7|chr7 (106183051-106183161) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lnt (0.142308) |