Non-Coding RNA Search

Ss1.1-Pig3-SRG8011K08.5

Sequence:


               
               CACTAAGCAAGGCCAGGGATCGAACCCGCAACCTCATGTTTCCTAGTCGGATTCATTTCC
ACTGCATCATGACAGGAACTCCTGAAAATACACTTTGTGATCCAAAGTGGAAAGCGAGAG
GTCCCCTCCCCACCCCTGCAGGTAGCAGGACCCTCACGCCCTAAAGGTGGACGCTGTGCC
CTGTGCTCACTGCCTCTCTGGCCCGCAGGGAGGAGGTGCAGGAGAACTGTGTGCGGTGGC
GGAAGAGGTTCACCTTCGTGTGTAAGATGAGCGCCAACCCGGCCACCGGCCTGCTGGACC
CCTGCGTCTTCCGAGTGTCAGTGCGCAAGGTGAGGTGGCGGGGCCGGTGGGGCCACTGGC
CTGGTGGCGTTAGGCCCGTGCCCCAAGTGACTGGGTCTGCCCGTCTTCTTGCCTCCTCCC
CTGGCAGCAGATTGGGGGGGTGGGGCGGAATGGGGAGACCCACGATGTCCCTGGGATCCC
CGGTCACCCTCGTGCCTGTGTCTGTCTCCCGTGCAGGAGCTGAAAGGCGGGAAGGCTTAT
TCCAAGGTAAGCAGGGCCGCGTGAAGGGGATGGGGGGGCGGGCTGGGGCCCGGCTGGACT
GGCATGAAGACGCTCCATCTGTGTCTCTGCCCCAAACAGGAGGCACCCTGCCCTCCATGG
ATGTATTATTTTTTGGCGATATCTGTATTGACCATCTTTGCGCTTAACACAGAGACAGCG
AATGCTTGTTGCAGCACACATAGCACAGAGGTTCCCAGAGTGACAGGAGGTTTCCACCCT
GTTCCTCCTCAGGCCTCCCCCACCCCCAGATCCCACCGTTTCGATTGGTTAGGCTCTTCC
CAGACCCTCTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACTAAGCAAGGCCAGGGATCGAACCCGCAACCTCATGTTTCCTAGTCGGATTCATTTCC
ACTGCATCATGACAGGAACTCCTGAAAATACACTTTGTGATCCAAAGTGGAAAGCGAGAG
GTCCCCTCCCCACCCCTGCAGGTAGCAGGACCCTCACGCCCTAAAGGTGGACGCTGTGCC
CTGTGCTCACTGCCTCTCTGGCCCGCAGGGAGGAGGTGCAGGAGAACTGTGTGCGGTGGC
GGAAGAGGTTCACCTTCGTGTGTAAGATGAGCGCCAACCCGGCCACCGGCCTGCTGGACC
CCTGCGTCTTCCGAGTGTCAGTGCGCAAGGTGAGGTGGCGGGGCCGGTGGGGCCACTGGC
CTGGTGGCGTTAGGCCCGTGCCCCAAGTGACTGGGTCTGCCCGTCTTCTTGCCTCCTCCC
CTGGCAGCAGATTGGGGGGGTGGGGCGGAATGGGGAGACCCACGATGTCCCTGGGATCCC
CGGTCACCCTCGTGCCTGTGTCTGTCTCCCGTGCAGGAGCTGAAAGGCGGGAAGGCTTAT
TCCAAGGTAAGCAGGGCCGCGTGAAGGGGATGGGGGGGCGGGCTGGGGCCCGGCTGGACT
GGCATGAAGACGCTCCATCTGTGTCTCTGCCCCAAACAGGAGGCACCCTGCCCTCCATGG
ATGTATTATTTTTTGGCGATATCTGTATTGACCATCTTTGCGCTTAACACAGAGACAGCG
AATGCTTGTTGCAGCACACATAGCACAGAGGTTCCCAGAGTGACAGGAGGTTTCCACCCT
GTTCCTCCTCAGGCCTCCCCCACCCCCAGATCCCACCGTTTCGATTGGTTAGGCTCTTCC
CAGACCCTCTAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               388-497, + strand, RNAz p=0.874897

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               388-497, + strand, RNAz p=0.874897

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               91-757, gnl|bosTau2|chr11 (77433321-77432683)
               

               
               91-757, gnl|Hg17|chr9 (127795894-127795193)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               91-757, gnl|bosTau2|chr11 (77433321-77432683)
               

               
               91-757, gnl|Hg17|chr9 (127795894-127795193)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ece (0.229305)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)

	91-757, gnl\|bosTau2\|chr11 (77433321-77432683)
	91-757, gnl\|Hg17\|chr9 (127795894-127795193)