Non-Coding RNA Search

Ss1.1-Pig3-SRG8011K09.5

Sequence:


               
               TGGCCGCTGCCGCCGCCGCCGCTGCTGCCGCCGCCGCCGCCGCCGCTCAGTGCCGGAGCC
CTCGGTGCGCGGCGGAGAGGAGAGGATTCCGGCGGGAACTCGACTCTTGGCGCCACCGCC
TCATGCACTGTGTAGGTTTTGAGAGTATTTTAGAAGGGCTTTATGGACCACGGCTACGAA
GAGACCTCAGTTTATTTGAAGACTGTGAACCAGAAGAGCTGACTGACTGGTCTATGGATG
AAAAATGTTCATTTTGTAACCTACAGAGAGAAGCAGTCAGTGATTGTATACCATCTCTTG
ATTCTGCACAGTCAACACCAACAGAGGAACTATCATCTCAGGGCCAGTCCAACACTGAAA
AGATTGAATGCCAAGCAGAAAATTACCTAAATGCACTCTTTCGAAAGAAAGATCTTCCTC
AGAACTGTGATCCTAACATTCCCCTAGTTGCTCAGGAATTAATGAAAAAGATGATACGTC
AGTTTGCAATTGAGTATATTTCAAAAAGTGGTAAAATTCAAGAGAATAGAAATGGTTCCA
TTGGACCAAGTCTAATATGTAAAAATATCCAAATGAATCAAGCAGAAAACTCCCTTCAGG
AAGAGCAGGAAGGCCCCTTAGACCTCACTGTGAATCGAATGCAAGAACAAAATACTCAGC
AAGCATGCTACAAGTGAAAACTGATGAGAAACTGAATTTGTCTGATGGGAATACAGCAAG
TTGCCCTTTGAGCCCCATTAAGATGTGCCTTAATCGTCCCATTGAATGGAATCTGAATTT
GACAGCAGCATCTCTAGCGAGCTGTACAGTTCATAACCAAAATCTCGAAGAGAAGTAGAT
TGCAATTCTTCTTGCACTGTCCTTATTTTGTACGTCAATATTCTTTCTGCCAATAAGCAT
TTATCTATTGATTTTAAAAATAGTCCCAGTACTGTGATTTGTCTATATATTAAATCATTA
ACTCGAGATTTCAATGATAGTTACTCATATAAAGACAGTAAAGAAACTTGTGCAGTGCTG
CAAAAAGTAGCCTTGTGGGCAAGAGCTCAAGCAGAGCGCACAGAAAAAAGTAAATTCAAT
CTACTTGAAACCTCAGAATTAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGCCGCTGCCGCCGCCGCCGCTGCTGCCGCCGCCGCCGCCGCCGCTCAGTGCCGGAGCC
CTCGGTGCGCGGCGGAGAGGAGAGGATTCCGGCGGGAACTCGACTCTTGGCGCCACCGCC
TCATGCACTGTGTAGGTTTTGAGAGTATTTTAGAAGGGCTTTATGGACCACGGCTACGAA
GAGACCTCAGTTTATTTGAAGACTGTGAACCAGAAGAGCTGACTGACTGGTCTATGGATG
AAAAATGTTCATTTTGTAACCTACAGAGAGAAGCAGTCAGTGATTGTATACCATCTCTTG
ATTCTGCACAGTCAACACCAACAGAGGAACTATCATCTCAGGGCCAGTCCAACACTGAAA
AGATTGAATGCCAAGCAGAAAATTACCTAAATGCACTCTTTCGAAAGAAAGATCTTCCTC
AGAACTGTGATCCTAACATTCCCCTAGTTGCTCAGGAATTAATGAAAAAGATGATACGTC
AGTTTGCAATTGAGTATATTTCAAAAAGTGGTAAAATTCAAGAGAATAGAAATGGTTCCA
TTGGACCAAGTCTAATATGTAAAAATATCCAAATGAATCAAGCAGAAAACTCCCTTCAGG
AAGAGCAGGAAGGCCCCTTAGACCTCACTGTGAATCGAATGCAAGAACAAAATACTCAGC
AAGCATGCTACAAGTGAAAACTGATGAGAAACTGAATTTGTCTGATGGGAATACAGCAAG
TTGCCCTTTGAGCCCCATTAAGATGTGCCTTAATCGTCCCATTGAATGGAATCTGAATTT
GACAGCAGCATCTCTAGCGAGCTGTACAGTTCATAACCAAAATCTCGAAGAGAAGTAGAT
TGCAATTCTTCTTGCACTGTCCTTATTTTGTACGTCAATATTCTTTCTGCCAATAAGCAT
TTATCTATTGATTTTAAAAATAGTCCCAGTACTGTGATTTGTCTATATATTAAATCATTA
ACTCGAGATTTCAATGATAGTTACTCATATAAAGACAGTAAAGAAACTTGTGCAGTGCTG
CAAAAAGTAGCCTTGTGGGCAAGAGCTCAAGCAGAGCGCACAGAAAAAAGTAAATTCAAT
CTACTTGAAACCTCAGAATTAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61867620|ref|XP_615971.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61867620|ref|XP_615971.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               984-1104, - strand, RNAz p=0.954257

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               984-1104, - strand, RNAz p=0.954257

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               410-663, gnl|bosTau2|chr6 (32350255-32350508)
               

               
               410-663, gnl|Hg17|chr4 (17587239-17586986)
               

               
               410-663, gnl|Mm7|chr5 (45069454-45069201)
               


               
               945-1104, gnl|bosTau2|chr6 (32374197-32374356)
               

               
               945-1104, gnl|canFam2|chr3 (94089801-94089616)
               

               
               945-1104, gnl|danRer3|chr1 (21097505-21097293)
               

               
               945-1104, gnl|dasNov1|scaffold_4325 (13050-12865)
               

               
               945-1104, gnl|fr1|chrUn (205357939-205358207)
               

               
               945-1104, gnl|galGal2|chr4 (76228105-76227920)
               

               
               945-1104, gnl|hg17|chr4 (17562239-17562424)
               

               
               945-1104, gnl|Hg17|chr4 (17562458-17562299)
               

               
               945-1104, gnl|mm7|chr5 (45056225-45056410)
               

               
               945-1104, gnl|Mm7|chr5 (45056444-45056285)
               

               
               945-1104, gnl|monDom2|scaffold_10 (21746244-21746059)
               

               
               945-1104, gnl|oryCun1|scaffold_177533 (53390-53205)
               

               
               945-1104, gnl|panTro1|chr3 (17916659-17916844)
               

               
               945-1104, gnl|rheMac2|chr5 (12701910-12702095)
               

               
               945-1104, gnl|rn3|chr14 (70433862-70433677)
               

               
               945-1104, gnl|tetNig1|chrUn_random (51454743-51454563)
               

               
               945-1104, gnl|xenTro1|scaffold_54 (2580081-2579896)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               410-663, gnl|bosTau2|chr6 (32350255-32350508)
               

               
               410-663, gnl|Hg17|chr4 (17587239-17586986)
               

               
               410-663, gnl|Mm7|chr5 (45069454-45069201)
               


               
               945-1104, gnl|bosTau2|chr6 (32374197-32374356)
               

               
               945-1104, gnl|canFam2|chr3 (94089801-94089616)
               

               
               945-1104, gnl|danRer3|chr1 (21097505-21097293)
               

               
               945-1104, gnl|dasNov1|scaffold_4325 (13050-12865)
               

               
               945-1104, gnl|fr1|chrUn (205357939-205358207)
               

               
               945-1104, gnl|galGal2|chr4 (76228105-76227920)
               

               
               945-1104, gnl|hg17|chr4 (17562239-17562424)
               

               
               945-1104, gnl|Hg17|chr4 (17562458-17562299)
               

               
               945-1104, gnl|mm7|chr5 (45056225-45056410)
               

               
               945-1104, gnl|Mm7|chr5 (45056444-45056285)
               

               
               945-1104, gnl|monDom2|scaffold_10 (21746244-21746059)
               

               
               945-1104, gnl|oryCun1|scaffold_177533 (53390-53205)
               

               
               945-1104, gnl|panTro1|chr3 (17916659-17916844)
               

               
               945-1104, gnl|rheMac2|chr5 (12701910-12702095)
               

               
               945-1104, gnl|rn3|chr14 (70433862-70433677)
               

               
               945-1104, gnl|tetNig1|chrUn_random (51454743-51454563)
               

               
               945-1104, gnl|xenTro1|scaffold_54 (2580081-2579896)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               lun (0.150489)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lun (0.150489)

	410-663, gnl\|bosTau2\|chr6 (32350255-32350508)
	410-663, gnl\|Hg17\|chr4 (17587239-17586986)
	410-663, gnl\|Mm7\|chr5 (45069454-45069201)

	945-1104, gnl\|bosTau2\|chr6 (32374197-32374356)
	945-1104, gnl\|canFam2\|chr3 (94089801-94089616)
	945-1104, gnl\|danRer3\|chr1 (21097505-21097293)
	945-1104, gnl\|dasNov1\|scaffold_4325 (13050-12865)
	945-1104, gnl\|fr1\|chrUn (205357939-205358207)
	945-1104, gnl\|galGal2\|chr4 (76228105-76227920)
	945-1104, gnl\|hg17\|chr4 (17562239-17562424)
	945-1104, gnl\|Hg17\|chr4 (17562458-17562299)
	945-1104, gnl\|mm7\|chr5 (45056225-45056410)
	945-1104, gnl\|Mm7\|chr5 (45056444-45056285)
	945-1104, gnl\|monDom2\|scaffold_10 (21746244-21746059)
	945-1104, gnl\|oryCun1\|scaffold_177533 (53390-53205)
	945-1104, gnl\|panTro1\|chr3 (17916659-17916844)
	945-1104, gnl\|rheMac2\|chr5 (12701910-12702095)
	945-1104, gnl\|rn3\|chr14 (70433862-70433677)
	945-1104, gnl\|tetNig1\|chrUn_random (51454743-51454563)
	945-1104, gnl\|xenTro1\|scaffold_54 (2580081-2579896)